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| | ==Crystal structure of hypothetical protein SCO1480 bound to DNA== | | ==Crystal structure of hypothetical protein SCO1480 bound to DNA== |
| - | <StructureSection load='4itq' size='340' side='right' caption='[[4itq]], [[Resolution|resolution]] 2.70Å' scene=''> | + | <StructureSection load='4itq' size='340' side='right'caption='[[4itq]], [[Resolution|resolution]] 2.70Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[4itq]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Strco Strco]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ITQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ITQ FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4itq]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_coelicolor_A3(2) Streptomyces coelicolor A3(2)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ITQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4ITQ FirstGlance]. <br> |
| - | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SCO1480 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=100226 STRCO])</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4itq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4itq OCA], [https://pdbe.org/4itq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4itq RCSB], [https://www.ebi.ac.uk/pdbsum/4itq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4itq ProSAT]</span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4itq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4itq OCA], [http://pdbe.org/4itq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4itq RCSB], [http://www.ebi.ac.uk/pdbsum/4itq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4itq ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/Q9KXR9_STRCO Q9KXR9_STRCO] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Strco]] | + | [[Category: Large Structures]] |
| - | [[Category: Elliot, M A]] | + | [[Category: Elliot MA]] |
| - | [[Category: Gloyd, M]] | + | [[Category: Gloyd M]] |
| - | [[Category: Guarne, A]] | + | [[Category: Guarne A]] |
| - | [[Category: Nanji, T]] | + | [[Category: Nanji T]] |
| - | [[Category: Swiercz, J P]] | + | [[Category: Swiercz JP]] |
| - | [[Category: Gene regulation]]
| + | |
| - | [[Category: H2th motif]]
| + | |
| - | [[Category: Nucleoid-associated protein]]
| + | |
| - | [[Category: Protein-dna complex]]
| + | |
| - | [[Category: Structural protein-dna complex]]
| + | |
| Structural highlights
Function
Q9KXR9_STRCO
Publication Abstract from PubMed
Effective chromosome organization is central to the functioning of any cell. In bacteria, this organization is achieved through the concerted activity of multiple nucleoid-associated proteins. These proteins are not, however, universally conserved, and different groups of bacteria have distinct subsets that contribute to chromosome architecture. Here, we describe the characterization of a novel actinobacterial-specific protein in Streptomyces coelicolor. We show that sIHF (SCO1480) associates with the nucleoid and makes important contributions to chromosome condensation and chromosome segregation during Streptomyces sporulation. It also affects antibiotic production, suggesting an additional role in gene regulation. In vitro, sIHF binds DNA in a length-dependent but sequence-independent manner, without any obvious structural preferences. It does, however, impact the activity of topoisomerase, significantly altering DNA topology. The sIHF-DNA co-crystal structure reveals sIHF to be composed of two domains: a long N-terminal helix and a C-terminal helix-two turns-helix domain with two separate DNA interaction sites, suggesting a potential role in bridging DNA molecules.
A novel nucleoid-associated protein specific to the actinobacteria.,Swiercz JP, Nanji T, Gloyd M, Guarne A, Elliot MA Nucleic Acids Res. 2013 Feb 20. PMID:23427309[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Swiercz JP, Nanji T, Gloyd M, Guarne A, Elliot MA. A novel nucleoid-associated protein specific to the actinobacteria. Nucleic Acids Res. 2013 Feb 20. PMID:23427309 doi:10.1093/nar/gkt095
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