Clp protease 3D structures
From Proteopedia
(Difference between revisions)
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{{#tree:id=OrganizedByTopic|openlevels=0| | {{#tree:id=OrganizedByTopic|openlevels=0| | ||
| - | *Clp P subunit | + | *Clp P subunit or ATP-dependent Clp protease proteolytic subunit |
**[[1tg6]] - hClpP – human<br /> | **[[1tg6]] - hClpP – human<br /> | ||
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**[[6mx2]] – CdClpP1 - ''Clostridium difficile'' <br /> | **[[6mx2]] – CdClpP1 - ''Clostridium difficile'' <br /> | ||
**[[3ktg]], [[3kth]], [[3tt6]] – BsClpP – ''Bacillus subtilis''<br /> | **[[3ktg]], [[3kth]], [[3tt6]] – BsClpP – ''Bacillus subtilis''<br /> | ||
| + | **[[7feq]], [[7fes]] - BsClpP – Cryo EM<br /> | ||
**[[3q7h]] - ClpP – ''Coxiella burnetii''<br /> | **[[3q7h]] - ClpP – ''Coxiella burnetii''<br /> | ||
**[[3qwd]], [[3st9]], [[3sta]], [[3v5e]], [[4emm]], [[4mxi]] - SaClpP – ''Staphylococcus aureus''<br /> | **[[3qwd]], [[3st9]], [[3sta]], [[3v5e]], [[4emm]], [[4mxi]] - SaClpP – ''Staphylococcus aureus''<br /> | ||
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**[[5g1s]], [[5g1r]], [[5g1q]], [[3p2l]] - ClpP – ''Francisella tularensis''<br /> | **[[5g1s]], [[5g1r]], [[5g1q]], [[3p2l]] - ClpP – ''Francisella tularensis''<br /> | ||
**[[6naq]] – NmClpP – ''Neisseria meningitidis''<br /> | **[[6naq]] – NmClpP – ''Neisseria meningitidis''<br /> | ||
| + | **[[7kr2]] - NmClpP – Cryo EM<br /> | ||
**[[6pbu]] – ClpP – ''Mycobacterium smegmatis'' <br /> | **[[6pbu]] – ClpP – ''Mycobacterium smegmatis'' <br /> | ||
**[[7m1l]], [[7m1m]] – ClpP – ''Pseudomonas aeruginosa'' <br /> | **[[7m1l]], [[7m1m]] – ClpP – ''Pseudomonas aeruginosa'' <br /> | ||
**[[6x60]] – ClpP2 – ''Chlamydia trachomatis'' <br /> | **[[6x60]] – ClpP2 – ''Chlamydia trachomatis'' <br /> | ||
| + | **[[7dft]] – XoClpP – ''Xanthomonas oryzae''<br /> | ||
*Clp P subunit binary complex | *Clp P subunit binary complex | ||
**[[6h23]] - hClpP (mutant) + carboxamide derivative<br /> | **[[6h23]] - hClpP (mutant) + carboxamide derivative<br /> | ||
| - | **[[6dl7]] - hClpP + pyrimidine derivative<br /> | + | **[[6dl7]], [[7vp9]], [[7wh5]] - hClpP + pyrimidine derivative<br /> |
**[[6bba]] - hClpP + ADEP-28<br /> | **[[6bba]] - hClpP + ADEP-28<br /> | ||
**[[2fzs]], [[3mt6]] - EcClpP + ADEP-1<br /> | **[[2fzs]], [[3mt6]] - EcClpP + ADEP-1<br /> | ||
**[[6ppe]] – EcClpP + ClpX – Cryo EM<br /> | **[[6ppe]] – EcClpP + ClpX – Cryo EM<br /> | ||
| + | **[[7mk5]] – EcClpP + inhibitor<br /> | ||
**[[2zl2]] - HpClpP + peptide<br /> | **[[2zl2]] - HpClpP + peptide<br /> | ||
**[[2zl4]] - HpClpP (mutant) + peptide<br /> | **[[2zl4]] - HpClpP (mutant) + peptide<br /> | ||
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**[[5dl1]], [[6l40]] – SaClpP + inhibitor<br /> | **[[5dl1]], [[6l40]] – SaClpP + inhibitor<br /> | ||
**[[5w18]], [[5vz2]], [[6pka]], [[6pmd]] – SaClpP + peptide<br /> | **[[5w18]], [[5vz2]], [[6pka]], [[6pmd]] – SaClpP + peptide<br /> | ||
| + | **[[7wgs]], [[7wid]], [[7xbz]] – SaClpP + activator<br /> | ||
**[[5dkp]] – NmClpP + ADEP <br /> | **[[5dkp]] – NmClpP + ADEP <br /> | ||
**[[6nah]] - NmClpP + ADEP-14<br /> | **[[6nah]] - NmClpP + ADEP-14<br /> | ||
| + | **[[7fep]], [[7fer]] – BsClpP + ADEP1 – Cryo EM <br /> | ||
| + | **[[7p80]], [[7p81]] – BsClpP + ADEP2<br /> | ||
**[[6vxf]] - NmClpP + ClpX + ADP + ATP – Cryo EM<br /> | **[[6vxf]] - NmClpP + ClpX + ADP + ATP – Cryo EM<br /> | ||
**[[6cfd]] – ClpP + ADEP-4 – ''Enterococcus faecium''<br /> | **[[6cfd]] – ClpP + ADEP-4 – ''Enterococcus faecium''<br /> | ||
| - | **[[7dfu]] – | + | **[[7dfu]] – XoClpP + ADEP-4 <br /> |
**[[6hwn]] – ClpP + tripeptide – ''Thermus thermophilus''<br /> | **[[6hwn]] – ClpP + tripeptide – ''Thermus thermophilus''<br /> | ||
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**[[3fes]] - CdClpC <br /> | **[[3fes]] - CdClpC <br /> | ||
**[[6pbq]] - MtClp N-terminal domain<br /> | **[[6pbq]] - MtClp N-terminal domain<br /> | ||
| - | **[[ | + | **[[8a8u]], [[8a8v]], [[8a8w]] - MtClp + antibiotic + ADP<br /> |
| - | **[[6cn8]] - MtClp N-terminal domain + | + | **[[6cn8]], [[6pbs]] - MtClp N-terminal domain 1-145 + antibiotics<br /> |
**[[6em8]], [[6em9]] - SaClp – Cryo EM<br /> | **[[6em8]], [[6em9]] - SaClp – Cryo EM<br /> | ||
| - | CLP A subunit and CLP N see [[Heat Shock Proteins]] Hsp100 | + | For CLP A subunit and CLP N see [[Heat Shock Proteins]] Hsp100 |
For ClpX see [[ClpX]] | For ClpX see [[ClpX]] | ||
Revision as of 10:26, 24 November 2022
3D structures of Clp protease
Updated on 24-November-2022
For CLP A subunit and CLP N see Heat Shock Proteins Hsp100
For ClpX see ClpX
