4jhp
From Proteopedia
(Difference between revisions)
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==The crystal structure of the RPGR RCC1-like domain in complex with PDE6D== | ==The crystal structure of the RPGR RCC1-like domain in complex with PDE6D== | ||
- | <StructureSection load='4jhp' size='340' side='right' caption='[[4jhp]], [[Resolution|resolution]] 1.90Å' scene=''> | + | <StructureSection load='4jhp' size='340' side='right'caption='[[4jhp]], [[Resolution|resolution]] 1.90Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[4jhp]] is a 2 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[4jhp]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JHP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4JHP FirstGlance]. <br> |
- | </td></tr> | + | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4jhp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4jhp OCA], [https://pdbe.org/4jhp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4jhp RCSB], [https://www.ebi.ac.uk/pdbsum/4jhp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4jhp ProSAT]</span></td></tr> |
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- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | |
</table> | </table> | ||
- | == Disease == | ||
- | [[http://www.uniprot.org/uniprot/RPGR_HUMAN RPGR_HUMAN]] Primary ciliary dyskinesia;Achromatopsia;Primary ciliary dyskinesia - retinitis pigmentosa;Cone rod dystrophy;Retinitis pigmentosa. Defects in RPGR are the cause of retinitis pigmentosa type 3 (RP3) [MIM:[http://omim.org/entry/300029 300029]]; also known as X-linked retinitis pigmentosa 3 (XLRP-3) or retinitis pigmentosa type 15 (RP15). A X-linked retinal dystrophy belonging to the group of pigmentary retinopathies. RP is characterized by retinal pigment deposits visible on fundus examination and primary loss of rod photoreceptor cells followed by secondary loss of cone photoreceptors. Patients typically have night vision blindness and loss of midperipheral visual field. As their condition progresses, they lose their far peripheral visual field and eventually central vision as well. In RP3, affected males have a severe phenotype, and carrier females show a wide spectrum of clinical features ranging from completely asymptomatic to severe retinitis pigmentosa. Heterozygous women can manifest a form of choroidoretinal degeneration which is distinguished from other types by the absence of visual defects in the presence of a brilliant, scintillating, golden-hued, patchy appearance most striking around the macula, called a tapetal-like retinal reflex.<ref>PMID:9990021</ref> <ref>PMID:8673101</ref> <ref>PMID:8817343</ref> <ref>PMID:10932196</ref> <ref>PMID:10970770</ref> <ref>PMID:9399904</ref> <ref>PMID:9855162</ref> <ref>PMID:10482958</ref> <ref>PMID:10737996</ref> <ref>PMID:10937588</ref> <ref>PMID:11180598</ref> <ref>PMID:11992260</ref> <ref>PMID:14564670</ref> <ref>PMID:12657579</ref> Defects in RPGR are the cause of retinitis pigmentosa and sinorespiratory infections with or without deafness (RPDSI) [MIM:[http://omim.org/entry/300455 300455]]. A disease characterized by the association primary ciliary dyskinesia features with retinitis pigmentosa. Some patients also manifest deafness.<ref>PMID:12920075</ref> <ref>PMID:14627685</ref> Defects in RPGR are the cause of cone-rod dystrophy X-linked type 1 (CORDX1) [MIM:[http://omim.org/entry/304020 304020]]; also known as cone dystrophy 1 (CO1). CORDs are inherited retinal dystrophies belonging to the group of pigmentary retinopathies. CORDs are characterized by retinal pigment deposits visible on fundus examination, predominantly in the macular region, and initial loss of cone photoreceptors followed by rod degeneration. This leads to decreased visual acuity and sensitivity in the central visual field, followed by loss of peripheral vision. Severe loss of vision occurs earlier than in retinitis pigmentosa. In CORDX1 the degree of rod-photoreceptor involvement can be variable, with degeneration increasing as the disease progresses. Affected individuals (essentially all of whom are males) present with decreased visual acuity, myopia, photophobia, abnormal color vision, full peripheral visual fields, decreased photopic electroretinographic responses, and granularity of the macular retinal pigment epithelium. Although penetrance appears to be nearly 100%, there is variable expressivity with respect to age at onset and severity of symptoms.<ref>PMID:11857109</ref> Defects in RPGR are a cause of macular degeneration X-linked atrophic (MDXLA) [MIM:[http://omim.org/entry/300834 300834]]. MDXLA is an ocular disorder characterized by macular atrophy causing progressive loss of visual acuity with minimal peripheral visual impairment. Some patients manifest extensive macular degeneration plus peripheral loss of retinal pigment epithelium and choriocapillaries. Full-field electroretinograms (ERGs) show normal cone and rod responses in some affected males despite advanced macular degeneration.<ref>PMID:12160730</ref> | ||
== Function == | == Function == | ||
- | [ | + | [https://www.uniprot.org/uniprot/PDE6D_HUMAN PDE6D_HUMAN] Acts as a GTP specific dissociation inhibitor (GDI). Increases the affinity of ARL3 for GTP by several orders of magnitude and does so by decreasing the nucleotide dissociation rate. Stabilizes Arl3-GTP by decreasing the nucleotide dissociation (By similarity). |
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
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==See Also== | ==See Also== | ||
- | *[[Phosphodiesterase|Phosphodiesterase]] | + | *[[Phosphodiesterase 3D structures|Phosphodiesterase 3D structures]] |
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
- | [[Category: | + | [[Category: Homo sapiens]] |
- | [[Category: Ismail | + | [[Category: Large Structures]] |
- | [[Category: Vetter | + | [[Category: Ismail S]] |
- | [[Category: Waetzlich | + | [[Category: Vetter I]] |
- | [[Category: Wittinghofer | + | [[Category: Waetzlich D]] |
- | + | [[Category: Wittinghofer A]] | |
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Revision as of 11:14, 24 November 2022
The crystal structure of the RPGR RCC1-like domain in complex with PDE6D
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