This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4jy2

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:30, 30 November 2022) (edit) (undo)
 
Line 1: Line 1:
==Crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase, native and unliganded form==
==Crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase, native and unliganded form==
-
<StructureSection load='4jy2' size='340' side='right' caption='[[4jy2]], [[Resolution|resolution]] 1.94&Aring;' scene=''>
+
<StructureSection load='4jy2' size='340' side='right'caption='[[4jy2]], [[Resolution|resolution]] 1.94&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4jy2]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Mesorhizobium_loti Mesorhizobium loti]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3alh 3alh]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JY2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4JY2 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4jy2]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mesorhizobium_japonicum_MAFF_303099 Mesorhizobium japonicum MAFF 303099]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3alh 3alh]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JY2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4JY2 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4jy3|4jy3]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4jy2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4jy2 OCA], [https://pdbe.org/4jy2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4jy2 RCSB], [https://www.ebi.ac.uk/pdbsum/4jy2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4jy2 ProSAT]</span></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">mlr6788 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=266835 Mesorhizobium loti])</td></tr>
+
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/3-hydroxy-2-methylpyridinecarboxylate_dioxygenase 3-hydroxy-2-methylpyridinecarboxylate dioxygenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.14.12.4 1.14.12.4] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4jy2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4jy2 OCA], [http://pdbe.org/4jy2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4jy2 RCSB], [http://www.ebi.ac.uk/pdbsum/4jy2 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4jy2 ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q988D3_RHILO Q988D3_RHILO]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: 3-hydroxy-2-methylpyridinecarboxylate dioxygenase]]
+
[[Category: Large Structures]]
-
[[Category: Mesorhizobium loti]]
+
[[Category: Mesorhizobium japonicum MAFF 303099]]
-
[[Category: Hayashi, H]]
+
[[Category: Hayashi H]]
-
[[Category: Kamitori, S]]
+
[[Category: Kamitori S]]
-
[[Category: Kobayashi, J]]
+
[[Category: Kobayashi J]]
-
[[Category: Mikami, B]]
+
[[Category: Mikami B]]
-
[[Category: Mizutani, K]]
+
[[Category: Mizutani K]]
-
[[Category: Takahashi, N]]
+
[[Category: Takahashi N]]
-
[[Category: Yagi, T]]
+
[[Category: Yagi T]]
-
[[Category: Yoshida, H]]
+
[[Category: Yoshida H]]
-
[[Category: 3-hydroxypyridine-5-carboxylic acid]]
+
-
[[Category: Fad binding motif]]
+
-
[[Category: Flavoenzyme]]
+
-
[[Category: Oxidoreductase]]
+

Current revision

Crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase, native and unliganded form

PDB ID 4jy2

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools