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| ==X-ray crystal structure of a heavy metal efflux pump, crystal form II== | | ==X-ray crystal structure of a heavy metal efflux pump, crystal form II== |
- | <StructureSection load='4k0e' size='340' side='right' caption='[[4k0e]], [[Resolution|resolution]] 3.71Å' scene=''> | + | <StructureSection load='4k0e' size='340' side='right'caption='[[4k0e]], [[Resolution|resolution]] 3.71Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[4k0e]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Cupriavidus_metallidurans_ch34 Cupriavidus metallidurans ch34]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4K0E OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4K0E FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4k0e]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Cupriavidus_metallidurans_CH34 Cupriavidus metallidurans CH34]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4K0E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4K0E FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4k0j|4k0j]]</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4k0e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4k0e OCA], [https://pdbe.org/4k0e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4k0e RCSB], [https://www.ebi.ac.uk/pdbsum/4k0e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4k0e ProSAT]</span></td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">zneA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=266264 Cupriavidus metallidurans CH34])</td></tr>
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- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4k0e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4k0e OCA], [http://pdbe.org/4k0e PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4k0e RCSB], [http://www.ebi.ac.uk/pdbsum/4k0e PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4k0e ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/Q1LCD8_CUPMC Q1LCD8_CUPMC] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Cupriavidus metallidurans ch34]] | + | [[Category: Cupriavidus metallidurans CH34]] |
- | [[Category: CSMP, Center for Structures of Membrane Proteins]] | + | [[Category: Large Structures]] |
- | [[Category: Ekende, E Ngonlong]] | + | [[Category: Ngonlong Ekende E]] |
- | [[Category: Pak, J E]] | + | [[Category: Pak JE]] |
- | [[Category: Stroud, R M]] | + | [[Category: Stroud RM]] |
- | [[Category: Vandenbussche, G]] | + | [[Category: Vandenbussche G]] |
- | [[Category: Center for structures of membrane protein]]
| + | |
- | [[Category: Csmp]]
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- | [[Category: Heavy metal efflux pump]]
| + | |
- | [[Category: Inner membrane]]
| + | |
- | [[Category: Psi-biology]]
| + | |
- | [[Category: Structural genomic]]
| + | |
- | [[Category: Transport protein]]
| + | |
- | [[Category: Zneb]]
| + | |
- | [[Category: Znec]]
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| Structural highlights
Function
Q1LCD8_CUPMC
Publication Abstract from PubMed
Efflux pumps belonging to the ubiquitous resistance-nodulation-cell division (RND) superfamily transport substrates out of cells by coupling proton conduction across the membrane to a conformationally driven pumping cycle. The heavy metal-resistant bacteria Cupriavidus metallidurans CH34 relies notably on as many as 12 heavy metal efflux pumps of the RND superfamily. Here we show that C. metallidurans CH34 ZneA is a proton driven efflux pump specific for Zn(II), and that transport of substrates through the transmembrane domain may be electrogenic. We report two X-ray crystal structures of ZneA in intermediate transport conformations, at 3.0 and 3.7 A resolution. The trimeric ZneA structures capture protomer conformations that differ in the spatial arrangement and Zn(II) occupancies at a proximal and a distal substrate binding site. Structural comparison shows that transport of substrates through a tunnel that links the two binding sites, toward an exit portal, is mediated by the conformation of a short 14-aa loop. Taken together, the ZneA structures presented here provide mechanistic insights into the conformational changes required for substrate efflux by RND superfamily transporters.
Structures of intermediate transport states of ZneA, a Zn(II)/proton antiporter.,Pak JE, Ekende EN, Kifle EG, O'Connell JD 3rd, De Angelis F, Tessema MB, Derfoufi KM, Robles-Colmenares Y, Robbins RA, Goormaghtigh E, Vandenbussche G, Stroud RM Proc Natl Acad Sci U S A. 2013 Nov 12;110(46):18484-9. doi:, 10.1073/pnas.1318705110. Epub 2013 Oct 30. PMID:24173033[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Pak JE, Ekende EN, Kifle EG, O'Connell JD 3rd, De Angelis F, Tessema MB, Derfoufi KM, Robles-Colmenares Y, Robbins RA, Goormaghtigh E, Vandenbussche G, Stroud RM. Structures of intermediate transport states of ZneA, a Zn(II)/proton antiporter. Proc Natl Acad Sci U S A. 2013 Nov 12;110(46):18484-9. doi:, 10.1073/pnas.1318705110. Epub 2013 Oct 30. PMID:24173033 doi:http://dx.doi.org/10.1073/pnas.1318705110
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