4kdz

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
==Crystal structure of tRNA/rRNA methyltransferase YibK from Escherichia coli (Target NYSGRC-012599)==
==Crystal structure of tRNA/rRNA methyltransferase YibK from Escherichia coli (Target NYSGRC-012599)==
-
<StructureSection load='4kdz' size='340' side='right' caption='[[4kdz]], [[Resolution|resolution]] 2.32&Aring;' scene=''>
+
<StructureSection load='4kdz' size='340' side='right'caption='[[4kdz]], [[Resolution|resolution]] 2.32&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4kdz]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecout Ecout]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4KDZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4KDZ FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4kdz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_UTI89 Escherichia coli UTI89]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4KDZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4KDZ FirstGlance]. <br>
-
</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">b3606, JW3581, trmL, UTI89_C4147, yibK ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=364106 ECOUT])</td></tr>
+
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4kdz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4kdz OCA], [https://pdbe.org/4kdz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4kdz RCSB], [https://www.ebi.ac.uk/pdbsum/4kdz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4kdz ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/tRNA_(cytidine(34)-2'-O)-methyltransferase tRNA (cytidine(34)-2'-O)-methyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.1.207 2.1.1.207] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4kdz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4kdz OCA], [http://pdbe.org/4kdz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4kdz RCSB], [http://www.ebi.ac.uk/pdbsum/4kdz PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4kdz ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/Q1R4Y9_ECOUT Q1R4Y9_ECOUT]] Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S-adenosyl-L-methionine to the 2'-OH of the wobble nucleotide (By similarity).[HAMAP-Rule:MF_01885]
+
[https://www.uniprot.org/uniprot/Q1R4Y9_ECOUT Q1R4Y9_ECOUT] Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S-adenosyl-L-methionine to the 2'-OH of the wobble nucleotide (By similarity).[HAMAP-Rule:MF_01885]
==See Also==
==See Also==
-
*[[TRNA methyltransferase|TRNA methyltransferase]]
+
*[[TRNA methyltransferase 3D structures|TRNA methyltransferase 3D structures]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Ecout]]
+
[[Category: Escherichia coli UTI89]]
-
[[Category: Almo, S C]]
+
[[Category: Large Structures]]
-
[[Category: Bhosle, R]]
+
[[Category: Almo SC]]
-
[[Category: Kim, J]]
+
[[Category: Bhosle R]]
-
[[Category: Structural genomic]]
+
[[Category: Kim J]]
-
[[Category: Toro, R]]
+
[[Category: Toro R]]
-
[[Category: Nysgrc]]
+
-
[[Category: Psi-biology]]
+
-
[[Category: S-adenosyl-l-methionine]]
+
-
[[Category: Spou methyltransferase]]
+
-
[[Category: Transferase]]
+

Revision as of 11:53, 30 November 2022

Crystal structure of tRNA/rRNA methyltransferase YibK from Escherichia coli (Target NYSGRC-012599)

PDB ID 4kdz

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools