4lb0

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==Crystal structure of a hydroxyproline epimerase from agrobacterium vitis, target efi-506420, with bound trans-4-oh-l-proline==
==Crystal structure of a hydroxyproline epimerase from agrobacterium vitis, target efi-506420, with bound trans-4-oh-l-proline==
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<StructureSection load='4lb0' size='340' side='right' caption='[[4lb0]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
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<StructureSection load='4lb0' size='340' side='right'caption='[[4lb0]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[4lb0]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Agrvs Agrvs]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4LB0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4LB0 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[4lb0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_vitis_S4 Agrobacterium vitis S4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4LB0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4LB0 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=HYP:4-HYDROXYPROLINE'>HYP</scene></td></tr>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=HYP:4-HYDROXYPROLINE'>HYP</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Avi_0518 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=311402 AGRVS])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4lb0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4lb0 OCA], [https://pdbe.org/4lb0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4lb0 RCSB], [https://www.ebi.ac.uk/pdbsum/4lb0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4lb0 ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4lb0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4lb0 OCA], [http://pdbe.org/4lb0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4lb0 RCSB], [http://www.ebi.ac.uk/pdbsum/4lb0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4lb0 ProSAT]</span></td></tr>
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</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/4HYPE_AGRVS 4HYPE_AGRVS]] Catalyzes the epimerization of trans-4-hydroxy-L-proline (t4LHyp) to cis-4-hydroxy-D-proline (c4DHyp). May be involved in a degradation pathway of t4LHyp. Can also catalyze the epimerization of trans-3-hydroxy-L-proline (t3LHyp) to cis-3-hydroxy-D-proline (c3DHyp) in vitro. Displays no proline racemase activity.<ref>PMID:24980702</ref>
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[https://www.uniprot.org/uniprot/4HYPE_AGRVS 4HYPE_AGRVS] Catalyzes the epimerization of trans-4-hydroxy-L-proline (t4LHyp) to cis-4-hydroxy-D-proline (c4DHyp). May be involved in a degradation pathway of t4LHyp. Can also catalyze the epimerization of trans-3-hydroxy-L-proline (t3LHyp) to cis-3-hydroxy-D-proline (c3DHyp) in vitro. Displays no proline racemase activity.<ref>PMID:24980702</ref>
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Agrvs]]
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[[Category: Agrobacterium vitis S4]]
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[[Category: Almo, S C]]
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[[Category: Large Structures]]
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[[Category: Bhosle, R]]
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[[Category: Al Obaidi NF]]
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[[Category: Chowdhury, S]]
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[[Category: Almo SC]]
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[[Category: EFI, Enzyme Function Initiative]]
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[[Category: Bhosle R]]
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[[Category: Evans, B]]
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[[Category: Chowdhury S]]
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[[Category: Gerlt, J A]]
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[[Category: Evans B]]
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[[Category: Glenn, A S]]
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[[Category: Gerlt JA]]
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[[Category: Hammonds, J]]
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[[Category: Glenn AS]]
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[[Category: Hillerich, B]]
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[[Category: Hammonds J]]
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[[Category: Imker, H J]]
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[[Category: Hillerich B]]
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[[Category: Love, J]]
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[[Category: Imker HJ]]
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[[Category: Morisco, L L]]
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[[Category: Love J]]
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[[Category: Obaidi, N F.Al]]
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[[Category: Morisco LL]]
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[[Category: Seidel, R D]]
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[[Category: Seidel RD]]
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[[Category: Sojitra, S]]
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[[Category: Sojitra S]]
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[[Category: Stead, M]]
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[[Category: Stead M]]
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[[Category: Toro, R]]
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[[Category: Toro R]]
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[[Category: Vetting, M W]]
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[[Category: Vetting MW]]
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[[Category: Washington, E]]
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[[Category: Washington E]]
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[[Category: Wasserman, S R]]
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[[Category: Wasserman SR]]
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[[Category: Efi]]
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[[Category: Enzyme function initiative]]
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[[Category: Isomerase]]
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[[Category: Proline racemase family]]
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[[Category: Proposed 3-oh and 4-oh proline epimerase]]
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[[Category: Structural genomic]]
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Revision as of 10:49, 14 December 2022

Crystal structure of a hydroxyproline epimerase from agrobacterium vitis, target efi-506420, with bound trans-4-oh-l-proline

PDB ID 4lb0

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