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| ==The crystal structure of Stx2 and a disaccharide ligand== | | ==The crystal structure of Stx2 and a disaccharide ligand== |
- | <StructureSection load='4m1u' size='340' side='right' caption='[[4m1u]], [[Resolution|resolution]] 1.56Å' scene=''> | + | <StructureSection load='4m1u' size='340' side='right'caption='[[4m1u]], [[Resolution|resolution]] 1.56Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[4m1u]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895] and [http://en.wikipedia.org/wiki/Eco57 Eco57]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4M1U OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4M1U FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4m1u]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [https://en.wikipedia.org/wiki/Escherichia_coli_O157:H7 Escherichia coli O157:H7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4M1U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4M1U FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=1PS:3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE'>1PS</scene>, <scene name='pdbligand=A2G:N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE'>A2G</scene>, <scene name='pdbligand=MBG:METHYL-BETA-GALACTOSE'>MBG</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1PS:3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE'>1PS</scene>, <scene name='pdbligand=A2G:N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE'>A2G</scene>, <scene name='pdbligand=MBG:METHYL-BETA-GALACTOSE'>MBG</scene></td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1r4p|1r4p]], [[1bos|1bos]]</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4m1u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4m1u OCA], [https://pdbe.org/4m1u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4m1u RCSB], [https://www.ebi.ac.uk/pdbsum/4m1u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4m1u ProSAT]</span></td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ECs1205, stx 2 A-subunit, stx2 A-subunit, stx2A, Z1464 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83334 ECO57]), stx2B, stx2dB, stx2vB, stxB2, stxII, vtx2B ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
| + | |
- | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/rRNA_N-glycosylase rRNA N-glycosylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.2.22 3.2.2.22] </span></td></tr>
| + | |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4m1u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4m1u OCA], [http://pdbe.org/4m1u PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4m1u RCSB], [http://www.ebi.ac.uk/pdbsum/4m1u PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4m1u ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/Q7DI68_ECO57 Q7DI68_ECO57] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| ==See Also== | | ==See Also== |
- | *[[Shiga toxin|Shiga toxin]] | + | *[[Shiga toxin 3D structures|Shiga toxin 3D structures]] |
| == References == | | == References == |
| <references/> | | <references/> |
| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Bacillus coli migula 1895]] | + | [[Category: Escherichia coli]] |
- | [[Category: Eco57]] | + | [[Category: Escherichia coli O157:H7]] |
- | [[Category: RRNA N-glycosylase]] | + | [[Category: Large Structures]] |
- | [[Category: Armstrong, G]] | + | [[Category: Armstrong G]] |
- | [[Category: Bundle, D R]] | + | [[Category: Bundle DR]] |
- | [[Category: Jacobson, J M]] | + | [[Category: Jacobson JM]] |
- | [[Category: James, M N.G]] | + | [[Category: James MNG]] |
- | [[Category: Kitov, P I]] | + | [[Category: Kitov PI]] |
- | [[Category: Mulvey, G]] | + | [[Category: Mulvey G]] |
- | [[Category: Yin, J]] | + | [[Category: Yin J]] |
- | [[Category: Hydrolase]]
| + | |
- | [[Category: Rrna n-glycosylase]]
| + | |
| Structural highlights
Function
Q7DI68_ECO57
Publication Abstract from PubMed
Shiga toxin type 2 (Stx2a) is clinically most closely associated with enterohemorrhagic E. coli O157:H7-mediated hemorrhagic colitis that sometimes progresses to hemolytic uremic syndrome. The the ability to express the toxin has been acquired by other E. coli strains and outbreaks of food poisoning have caused significant mortality rates as for example in the 2011 outbreak in Northern Germany. Stx2a, an AB5 toxin, gains entry into human cells via the glycosphingolipid receptor Gb3. We have determined the first crystal structure of a disaccharide analogue of Gb3 bound to the B5 pentamer of Stx2a holotoxin. In this Gb3 analogue, alpha-GalNAc replaces the terminal alpha-Gal residue. This molecular structure confirms previous inferences that two of the primary binding sites identified in the B5 pentamer of Stx1 are also functional in Stx2a. This knowledge provides a rationale for the synthesis and evaluation of heterobifunctional antagonists for E. coli toxins that target Stx2a. Incorporation of GalNAc Gb3 trisaccharide in a heterobifunctional ligand with attached pyruvate acetal, a ligand for human amyloid P component, and conjugation to poly[acrylamide-co-(3-azidopropylmeth-acrylamide)] produced a polymer that neutralized Stx2a in a mouse model of Shigatoxemia.
The crystal structure of Shiga toxin type 2 with bound disaccharide guides the design of a heterobifunctional toxin inhibitor.,Jacobson JM, Yin J, Kitov PI, Mulvey G, Griener TP, James MN, Armstrong G, Bundle DR J Biol Chem. 2013 Nov 13. PMID:24225957[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Jacobson JM, Yin J, Kitov PI, Mulvey G, Griener TP, James MN, Armstrong G, Bundle DR. The crystal structure of Shiga toxin type 2 with bound disaccharide guides the design of a heterobifunctional toxin inhibitor. J Biol Chem. 2013 Nov 13. PMID:24225957 doi:http://dx.doi.org/10.1074/jbc.M113.518886
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