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| ==P. vulgaris HIGBA structure, crystal form 1== | | ==P. vulgaris HIGBA structure, crystal form 1== |
- | <StructureSection load='4mct' size='340' side='right' caption='[[4mct]], [[Resolution|resolution]] 2.80Å' scene=''> | + | <StructureSection load='4mct' size='340' side='right'caption='[[4mct]], [[Resolution|resolution]] 2.80Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[4mct]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_29905 Atcc 29905]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4MCT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4MCT FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4mct]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Proteus_vulgaris Proteus vulgaris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4MCT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4MCT FirstGlance]. <br> |
- | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4mcx|4mcx]]</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4mct FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4mct OCA], [https://pdbe.org/4mct PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4mct RCSB], [https://www.ebi.ac.uk/pdbsum/4mct PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4mct ProSAT]</span></td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">higA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=585 ATCC 29905]), higB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=585 ATCC 29905])</td></tr>
| + | |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4mct FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4mct OCA], [http://pdbe.org/4mct PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4mct RCSB], [http://www.ebi.ac.uk/pdbsum/4mct PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4mct ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/HIGA_PROVU HIGA_PROVU] Antitoxin component of a type II toxin-antitoxin (TA) system that counteracts the effect of the HigB toxin (PubMed:19423702, PubMed:8645296, PubMed:24257752). Binds to its own promoter and regulates transcription of the higB/higA operon (PubMed:24257752).<ref>PMID:19423702</ref> <ref>PMID:24257752</ref> <ref>PMID:8645296</ref> |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Atcc 29905]] | + | [[Category: Large Structures]] |
- | [[Category: Dunham, C M]] | + | [[Category: Proteus vulgaris]] |
- | [[Category: Maehigashi, T]] | + | [[Category: Dunham CM]] |
- | [[Category: Schureck, M A]] | + | [[Category: Maehigashi T]] |
- | [[Category: Bacterial toxin]] | + | [[Category: Schureck MA]] |
- | [[Category: Biofilm]]
| + | |
- | [[Category: Cell metabolism]]
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- | [[Category: Energy metabolism]]
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- | [[Category: Helix-turn-helix transcription factor]]
| + | |
- | [[Category: Microbial pathogenesis]]
| + | |
- | [[Category: Stress response]]
| + | |
- | [[Category: Stringent response]]
| + | |
- | [[Category: Toxin]]
| + | |
- | [[Category: Transcription repressor]]
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- | [[Category: Translation control]]
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| Structural highlights
Function
HIGA_PROVU Antitoxin component of a type II toxin-antitoxin (TA) system that counteracts the effect of the HigB toxin (PubMed:19423702, PubMed:8645296, PubMed:24257752). Binds to its own promoter and regulates transcription of the higB/higA operon (PubMed:24257752).[1] [2] [3]
Publication Abstract from PubMed
Bacterial toxin-antitoxin (TA) systems regulate key cellular processes to promote cell survival during periods of stress. During steady-state cell growth, antitoxins typically interact with their cognate toxins to inhibit activity presumably by preventing substrate recognition. We solved two X-ray crystal structures of the Proteus vulgaris tetrameric HigB-(HigA)2-HigB TA complex and find that, unlike most other TA systems, the antitoxin HigA makes minimal interactions with the toxin HigB. HigB adopts a RelE-family tertiary fold containing a highly conserved, concave surface where we predict its active site is located. HigA does not cover the solvent exposed HigB active site, suggesting that in general, toxin inhibition is not solely mediated by active site hindrance by antitoxin binding. Each HigA monomer contains a helix-turn-helix (HTH) motif that binds to its own DNA operator to repress transcription during normal cellular growth. This is distinct from antitoxins belonging to other super families that typically only form DNA-binding motifs upon dimerization. We further show that disruption of the HigB-(HigA)2-HigB tetramer to a HigBA heterodimer ablates operator binding. Taken together, our biochemical and structural studies elucidate the novel molecular details of the HigBA TA system.
Structure of the P. vulgaris HigB-(HigA)2-HigB toxin-antitoxin complex.,Schureck MA, Maehigashi T, Miles SJ, Marquez J, Ei Cho S, Erdman R, Dunham CM J Biol Chem. 2013 Nov 20. PMID:24257752[4]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Hurley JM, Woychik NA. Bacterial toxin HigB associates with ribosomes and mediates translation-dependent mRNA cleavage at A-rich sites. J Biol Chem. 2009 Jul 10;284(28):18605-13. doi: 10.1074/jbc.M109.008763. Epub, 2009 May 7. PMID:19423702 doi:http://dx.doi.org/10.1074/jbc.M109.008763
- ↑ Schureck MA, Maehigashi T, Miles SJ, Marquez J, Ei Cho S, Erdman R, Dunham CM. Structure of the P. vulgaris HigB-(HigA)2-HigB toxin-antitoxin complex. J Biol Chem. 2013 Nov 20. PMID:24257752 doi:http://dx.doi.org/10.1074/jbc.M113.512095
- ↑ Tian QB, Ohnishi M, Tabuchi A, Terawaki Y. A new plasmid-encoded proteic killer gene system: cloning, sequencing, and analyzing hig locus of plasmid Rts1. Biochem Biophys Res Commun. 1996 Mar 18;220(2):280-4. PMID:8645296 doi:http://dx.doi.org/S0006-291X(96)90396-4
- ↑ Schureck MA, Maehigashi T, Miles SJ, Marquez J, Ei Cho S, Erdman R, Dunham CM. Structure of the P. vulgaris HigB-(HigA)2-HigB toxin-antitoxin complex. J Biol Chem. 2013 Nov 20. PMID:24257752 doi:http://dx.doi.org/10.1074/jbc.M113.512095
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