This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4mij

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
 +
==Crystal structure of a Trap periplasmic solute binding protein from Polaromonas sp. JS666 (Bpro_3107), target EFI-510173, with bound alpha/beta D-Galacturonate, space group P21==
==Crystal structure of a Trap periplasmic solute binding protein from Polaromonas sp. JS666 (Bpro_3107), target EFI-510173, with bound alpha/beta D-Galacturonate, space group P21==
-
<StructureSection load='4mij' size='340' side='right' caption='[[4mij]], [[Resolution|resolution]] 1.10&Aring;' scene=''>
+
<StructureSection load='4mij' size='340' side='right'caption='[[4mij]], [[Resolution|resolution]] 1.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4mij]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Polsj Polsj]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4MIJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4MIJ FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4mij]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Polaromonas_sp._JS666 Polaromonas sp. JS666]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4MIJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4MIJ FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADA:ALPHA-D-GALACTOPYRANURONIC+ACID'>ADA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GTR:BETA-D-GALACTOPYRANURONIC+ACID'>GTR</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADA:ALPHA-D-GALACTOPYRANURONIC+ACID'>ADA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GTR:BETA-D-GALACTOPYRANURONIC+ACID'>GTR</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4mhf|4mhf]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4mij FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4mij OCA], [https://pdbe.org/4mij PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4mij RCSB], [https://www.ebi.ac.uk/pdbsum/4mij PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4mij ProSAT]</span></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Bpro_3107 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=296591 POLSJ])</td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4mij FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4mij OCA], [http://pdbe.org/4mij PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4mij RCSB], [http://www.ebi.ac.uk/pdbsum/4mij PDBsum]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/DCTP1_POLSJ DCTP1_POLSJ] Solute-binding protein that binds D-galacturonate and D-glucuronate (in vitro) (PubMed:25540822). Probably part of a tripartite ATP-independent periplasmic (TRAP) transport system that mediates solute transport into the cytoplasm.<ref>PMID:25540822</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 21: Line 22:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Polsj]]
+
[[Category: Large Structures]]
-
[[Category: Almo, S C]]
+
[[Category: Polaromonas sp. JS666]]
-
[[Category: Bhosle, R]]
+
[[Category: Al Obaidi NF]]
-
[[Category: Chowdhury, S]]
+
[[Category: Almo SC]]
-
[[Category: EFI, Enzyme Function Initiative]]
+
[[Category: Bhosle R]]
-
[[Category: Evans, B]]
+
[[Category: Chowdhury S]]
-
[[Category: Gerlt, J A]]
+
[[Category: Evans B]]
-
[[Category: Glenn, A Scott]]
+
[[Category: Gerlt JA]]
-
[[Category: Hammonds, J]]
+
[[Category: Hammonds J]]
-
[[Category: Hillerich, B]]
+
[[Category: Hillerich B]]
-
[[Category: Imker, H J]]
+
[[Category: Imker HJ]]
-
[[Category: Jacobson, M P]]
+
[[Category: Jacobson MP]]
-
[[Category: Love, J]]
+
[[Category: Love J]]
-
[[Category: Morisco, L L]]
+
[[Category: Morisco LL]]
-
[[Category: Obaidi, N F.Al]]
+
[[Category: Scott Glenn A]]
-
[[Category: Seidel, R D]]
+
[[Category: Seidel RD]]
-
[[Category: Sojitra, S]]
+
[[Category: Sojitra S]]
-
[[Category: Stead, M]]
+
[[Category: Stead M]]
-
[[Category: Toro, R]]
+
[[Category: Toro R]]
-
[[Category: Vetting, M W]]
+
[[Category: Vetting MW]]
-
[[Category: Washington, E]]
+
[[Category: Washington E]]
-
[[Category: Wasserman, S R]]
+
[[Category: Wasserman SR]]
-
[[Category: Zhao, S]]
+
[[Category: Zhao S]]
-
[[Category: Efi]]
+
-
[[Category: Enzyme function initiative]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Transport protein]]
+
-
[[Category: Trap periplasmic solute binding family]]
+

Revision as of 09:40, 28 December 2022

Crystal structure of a Trap periplasmic solute binding protein from Polaromonas sp. JS666 (Bpro_3107), target EFI-510173, with bound alpha/beta D-Galacturonate, space group P21

PDB ID 4mij

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4mij"
Personal tools