This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.

4n23

From Proteopedia

(Difference between revisions)

Jump to: navigation, search

Revision as of 10:27, 28 December 2022

Crystal structure of the GP2 Core Domain from the California Academy of Science Virus, monoclinic symmetry

Structural highlights

4n23 is a 3 chain structure with sequence from CAS virus. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:	,
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

J7H5L9_9VIRU

Publication Abstract from PubMed

Fusion of the viral and host cell membranes is a necessary first step for infection by enveloped viruses and is mediated by the envelope glycoprotein. The transmembrane subunits from the structurally defined "class I" glycoproteins adopt an alpha-helical "trimer-of-hairpins" conformation during the fusion pathway. Here, we present our studies on the envelope glycoprotein transmembrane subunit, GP2, of the CAS virus (CASV). CASV was recently identified from annulated tree boas (Corallus annulatus) with inclusion body disease and is implicated in the disease etiology. We have generated and characterized two protein constructs consisting of the predicted CASV GP2 core domain. The crystal structure of the CASV GP2 post-fusion conformation indicates a trimeric alpha-helical bundle that is highly similar to those of Ebola virus and Marburg virus GP2 despite CASV genome homology to arenaviruses. Denaturation studies demonstrate that the stability of CASV GP2 is pH dependent with higher stability at lower pH; we propose that this behavior is due to a network of interactions among acidic residues that would destabilize the alpha-helical bundle under conditions where the side chains are deprotonated. The pH-dependent stability of the post-fusion structure has been observed in Ebola virus and Marburg virus GP2, as well as other viruses that enter via the endosome. Infection experiments with CASV and the related Golden Gate virus support a mechanism of entry that requires endosomal acidification. Our results suggest that, despite being primarily arenavirus like, the transmembrane subunit of CASV is extremely similar to the filoviruses.

Structural Characterization of the Glycoprotein GP2 Core Domain from the CAS Virus, a Novel Arenavirus-Like Species.,Koellhoffer JF, Dai Z, Malashkevich VN, Stenglein MD, Liu Y, Toro R, Harrison J, Chandran K, Derisi JL, Almo SC, Lai JR J Mol Biol. 2013 Dec 12. pii: S0022-2836(13)00751-1. doi:, 10.1016/j.jmb.2013.12.009. PMID:24333483^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Koellhoffer JF, Dai Z, Malashkevich VN, Stenglein MD, Liu Y, Toro R, Harrison J, Chandran K, Derisi JL, Almo SC, Lai JR. Structural Characterization of the Glycoprotein GP2 Core Domain from the CAS Virus, a Novel Arenavirus-Like Species. J Mol Biol. 2013 Dec 12. pii: S0022-2836(13)00751-1. doi:, 10.1016/j.jmb.2013.12.009. PMID:24333483 doi:http://dx.doi.org/10.1016/j.jmb.2013.12.009

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 See Also
5 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4n23"

@@ Line 1: / Line 1: @@
 ==Crystal structure of the GP2 Core Domain from the California Academy of Science Virus, monoclinic symmetry==
-<StructureSection load='4n23' size='340' side='right' caption='[[4n23]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
+<StructureSection load='4n23' size='340' side='right'caption='[[4n23]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[4n23]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Cas_virus Cas virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4N23 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4N23 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[4n23]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/CAS_virus CAS virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4N23 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4N23 FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=MRD:(4R)-2-METHYLPENTANE-2,4-DIOL'>MRD</scene></td></tr>
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=MRD:(4R)-2-METHYLPENTANE-2,4-DIOL'>MRD</scene></td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4n21|4n21]]</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4n23 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4n23 OCA], [https://pdbe.org/4n23 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4n23 RCSB], [https://www.ebi.ac.uk/pdbsum/4n23 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4n23 ProSAT]</span></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">GP2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1223561 CAS virus])</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4n23 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4n23 OCA], [http://pdbe.org/4n23 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4n23 RCSB], [http://www.ebi.ac.uk/pdbsum/4n23 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4n23 ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/J7H5L9_9VIRU J7H5L9_9VIRU]
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 18: / Line 18: @@
 </div>
 <div class="pdbe-citations 4n23" style="background-color:#fffaf0;"></div>
+==See Also==
+*[[Glycoprotein GP 3D structures|Glycoprotein GP 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Cas virus]]
+[[Category: CAS virus]]
-[[Category: Almo, S C]]
+[[Category: Large Structures]]
-[[Category: Dai, Z]]
+[[Category: Almo SC]]
-[[Category: Koellhoffer, J F]]
+[[Category: Dai Z]]
-[[Category: Lai, J R]]
+[[Category: Koellhoffer JF]]
-[[Category: Malashkevich, V N]]
+[[Category: Lai JR]]
-[[Category: Structural genomic]]
+[[Category: Malashkevich VN]]
-[[Category: Toro, R]]
+[[Category: Toro R]]
-[[Category: Marburg virus]]
-[[Category: Nysgrc]]
-[[Category: Post-fusion conformation]]
-[[Category: Psi-biology]]
-[[Category: Viral protein]]

4n23

From Proteopedia

Revision as of 10:27, 28 December 2022

Crystal structure of the GP2 Core Domain from the California Academy of Science Virus, monoclinic symmetry

Structural highlights

Function

Publication Abstract from PubMed

See Also

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

Views

Personal tools

Navigation

Search

Toolbox