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| | ==Structure of the N-acetyltransferase domain of X. fastidiosa NAGS/K== | | ==Structure of the N-acetyltransferase domain of X. fastidiosa NAGS/K== |
| - | <StructureSection load='4nex' size='340' side='right' caption='[[4nex]], [[Resolution|resolution]] 1.70Å' scene=''> | + | <StructureSection load='4nex' size='340' side='right'caption='[[4nex]], [[Resolution|resolution]] 1.70Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[4nex]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Xylft Xylft]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4NEX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4NEX FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4nex]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Xylella_fastidiosa_Temecula1 Xylella fastidiosa Temecula1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4NEX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4NEX FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NLG:N-ACETYL-L-GLUTAMATE'>NLG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NLG:N-ACETYL-L-GLUTAMATE'>NLG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4k30|4k30]], [[3s6h|3s6h]]</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4nex FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4nex OCA], [https://pdbe.org/4nex PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4nex RCSB], [https://www.ebi.ac.uk/pdbsum/4nex PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4nex ProSAT]</span></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ArgA/B, argB, PD_0293 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=183190 XYLFT])</td></tr>
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| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Acetylglutamate_kinase Acetylglutamate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.2.8 2.7.2.8] </span></td></tr>
| + | |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4nex FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4nex OCA], [http://pdbe.org/4nex PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4nex RCSB], [http://www.ebi.ac.uk/pdbsum/4nex PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4nex ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/ARGB_XYLFT ARGB_XYLFT] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Acetylglutamate kinase]] | + | [[Category: Large Structures]] |
| - | [[Category: Xylft]] | + | [[Category: Xylella fastidiosa Temecula1]] |
| - | [[Category: Allewell, N M]] | + | [[Category: Allewell NM]] |
| - | [[Category: Jin, Z]] | + | [[Category: Jin Z]] |
| - | [[Category: Shi, D]] | + | [[Category: Shi D]] |
| - | [[Category: Tuchman, M]] | + | [[Category: Tuchman M]] |
| - | [[Category: Zhao, G]] | + | [[Category: Zhao G]] |
| - | [[Category: Gcn5-related n-acetyltransferase dold]]
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| - | [[Category: Synthase]]
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| - | [[Category: Transferase]]
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| Structural highlights
Function
ARGB_XYLFT
Publication Abstract from PubMed
Structures of the catalytic N-acetyltransferase (NAT) domain of the bifunctional N-acetyl-L-glutamate synthase/kinase (NAGS/K) from Xylella fastidiosa bound to N-acetyl-L-glutamate (NAG) with and without an N-terminal His tag have been solved and refined at 1.7 and 1.4 A resolution, respectively. The NAT domain with an N-terminal His tag crystallized in space group P41212, with unit-cell parameters a = b = 51.72, c = 242.31 A. Two subunits form a molecular dimer in the asymmetric unit, which contains approximately 41% solvent. The NAT domain without an N-terminal His tag crystallized in space group P21, with unit-cell parameters a = 63.48, b = 122.34, c = 75.88 A, beta = 107.6 degrees . Eight subunits, which form four molecular dimers, were identified in the asymmetric unit, which contains approximately 38% solvent. The structures with and without the N-terminal His tag provide an opportunity to evaluate how the His tag affects structure and function. Furthermore, multiple subunits in different packing environments allow an assessment of the plasticity of the NAG binding site, which might be relevant to substrate binding and product release. The dimeric structure of the X. fastidiosa N-acetytransferase (xfNAT) domain is very similar to that of human N-acetyltransferase (hNAT), reinforcing the notion that mammalian NAGS is evolutionally derived from bifunctional bacterial NAGS/K.
Structures of the N-acetyltransferase domain of Xylella fastidiosaN-acetyl-L-glutamate synthase/kinase with and without a His tag bound to N-acetyl-L-glutamate.,Zhao G, Jin Z, Allewell NM, Tuchman M, Shi D Acta Crystallogr F Struct Biol Commun. 2015 Jan 1;71(Pt 1):86-95. doi:, 10.1107/S2053230X14026788. Epub 2015 Jan 1. PMID:25615976[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Zhao G, Jin Z, Allewell NM, Tuchman M, Shi D. Structures of the N-acetyltransferase domain of Xylella fastidiosaN-acetyl-L-glutamate synthase/kinase with and without a His tag bound to N-acetyl-L-glutamate. Acta Crystallogr F Struct Biol Commun. 2015 Jan 1;71(Pt 1):86-95. doi:, 10.1107/S2053230X14026788. Epub 2015 Jan 1. PMID:25615976 doi:http://dx.doi.org/10.1107/S2053230X14026788
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