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| | ==Structure of N-acetyltransferase domain of X. fastidiosa NAGS/K without his-tag== | | ==Structure of N-acetyltransferase domain of X. fastidiosa NAGS/K without his-tag== |
| - | <StructureSection load='4nf1' size='340' side='right' caption='[[4nf1]], [[Resolution|resolution]] 1.40Å' scene=''> | + | <StructureSection load='4nf1' size='340' side='right'caption='[[4nf1]], [[Resolution|resolution]] 1.40Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[4nf1]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Xylft Xylft]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4NF1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4NF1 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4nf1]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Xylella_fastidiosa_Temecula1 Xylella fastidiosa Temecula1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4NF1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4NF1 FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NLG:N-ACETYL-L-GLUTAMATE'>NLG</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NLG:N-ACETYL-L-GLUTAMATE'>NLG</scene></td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4nee|4nee]]</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4nf1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4nf1 OCA], [https://pdbe.org/4nf1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4nf1 RCSB], [https://www.ebi.ac.uk/pdbsum/4nf1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4nf1 ProSAT]</span></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">argA/B, argB, PD_0293 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=183190 XYLFT])</td></tr>
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| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Acetylglutamate_kinase Acetylglutamate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.2.8 2.7.2.8] </span></td></tr>
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| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4nf1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4nf1 OCA], [http://pdbe.org/4nf1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4nf1 RCSB], [http://www.ebi.ac.uk/pdbsum/4nf1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4nf1 ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/ARGB_XYLFT ARGB_XYLFT] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Acetylglutamate kinase]] | + | [[Category: Large Structures]] |
| - | [[Category: Xylft]] | + | [[Category: Xylella fastidiosa Temecula1]] |
| - | [[Category: Allewell, N M]] | + | [[Category: Allewell NM]] |
| - | [[Category: Jin, Z]] | + | [[Category: Jin Z]] |
| - | [[Category: Shi, D]] | + | [[Category: Shi D]] |
| - | [[Category: Tuchman, M]] | + | [[Category: Tuchman M]] |
| - | [[Category: Zhao, G]] | + | [[Category: Zhao G]] |
| - | [[Category: Gcn5-related acetytransferase fold]]
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| - | [[Category: Synthase/kinase]]
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| - | [[Category: Transferase]]
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| Structural highlights
Function
ARGB_XYLFT
Publication Abstract from PubMed
Structures of the catalytic N-acetyltransferase (NAT) domain of the bifunctional N-acetyl-L-glutamate synthase/kinase (NAGS/K) from Xylella fastidiosa bound to N-acetyl-L-glutamate (NAG) with and without an N-terminal His tag have been solved and refined at 1.7 and 1.4 A resolution, respectively. The NAT domain with an N-terminal His tag crystallized in space group P41212, with unit-cell parameters a = b = 51.72, c = 242.31 A. Two subunits form a molecular dimer in the asymmetric unit, which contains approximately 41% solvent. The NAT domain without an N-terminal His tag crystallized in space group P21, with unit-cell parameters a = 63.48, b = 122.34, c = 75.88 A, beta = 107.6 degrees . Eight subunits, which form four molecular dimers, were identified in the asymmetric unit, which contains approximately 38% solvent. The structures with and without the N-terminal His tag provide an opportunity to evaluate how the His tag affects structure and function. Furthermore, multiple subunits in different packing environments allow an assessment of the plasticity of the NAG binding site, which might be relevant to substrate binding and product release. The dimeric structure of the X. fastidiosa N-acetytransferase (xfNAT) domain is very similar to that of human N-acetyltransferase (hNAT), reinforcing the notion that mammalian NAGS is evolutionally derived from bifunctional bacterial NAGS/K.
Structures of the N-acetyltransferase domain of Xylella fastidiosaN-acetyl-L-glutamate synthase/kinase with and without a His tag bound to N-acetyl-L-glutamate.,Zhao G, Jin Z, Allewell NM, Tuchman M, Shi D Acta Crystallogr F Struct Biol Commun. 2015 Jan 1;71(Pt 1):86-95. doi:, 10.1107/S2053230X14026788. Epub 2015 Jan 1. PMID:25615976[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Zhao G, Jin Z, Allewell NM, Tuchman M, Shi D. Structures of the N-acetyltransferase domain of Xylella fastidiosaN-acetyl-L-glutamate synthase/kinase with and without a His tag bound to N-acetyl-L-glutamate. Acta Crystallogr F Struct Biol Commun. 2015 Jan 1;71(Pt 1):86-95. doi:, 10.1107/S2053230X14026788. Epub 2015 Jan 1. PMID:25615976 doi:http://dx.doi.org/10.1107/S2053230X14026788
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