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| <StructureSection load='4o34' size='340' side='right'caption='[[4o34]], [[Resolution|resolution]] 2.09Å' scene=''> | | <StructureSection load='4o34' size='340' side='right'caption='[[4o34]], [[Resolution|resolution]] 2.09Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[4o34]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4O34 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4O34 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4o34]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4O34 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4O34 FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> |
- | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4o34 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4o34 OCA], [https://pdbe.org/4o34 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4o34 RCSB], [https://www.ebi.ac.uk/pdbsum/4o34 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4o34 ProSAT]</span></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4o34 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4o34 OCA], [http://pdbe.org/4o34 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4o34 RCSB], [http://www.ebi.ac.uk/pdbsum/4o34 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4o34 ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| == Function == | | == Function == |
- | [[http://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref> | + | [https://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref> |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| [[Category: Gallus gallus]] | | [[Category: Gallus gallus]] |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Lysozyme]]
| + | [[Category: Barty A]] |
- | [[Category: Barty, A]] | + | [[Category: Bean R]] |
- | [[Category: Bean, R]] | + | [[Category: Betzel C]] |
- | [[Category: Betzel, C]] | + | [[Category: Burkhardt A]] |
- | [[Category: Burkhardt, A]] | + | [[Category: Chapman HN]] |
- | [[Category: Chapman, H N]] | + | [[Category: Chervinskii F]] |
- | [[Category: Chervinskii, F]] | + | [[Category: Fischer P]] |
- | [[Category: Fischer, P]] | + | [[Category: Galli L]] |
- | [[Category: Galli, L]] | + | [[Category: Gati C]] |
- | [[Category: Gati, C]] | + | [[Category: Kirian RA]] |
- | [[Category: Kirian, R A]] | + | [[Category: Liang M]] |
- | [[Category: Liang, M]] | + | [[Category: Mayer J]] |
- | [[Category: Mayer, J]] | + | [[Category: Meents A]] |
- | [[Category: Meents, A]] | + | [[Category: Oberthuer D]] |
- | [[Category: Oberthuer, D]] | + | [[Category: Pannerselvam S]] |
- | [[Category: Pannerselvam, S]] | + | [[Category: Speller E]] |
- | [[Category: Speller, E]] | + | [[Category: Stellato F]] |
- | [[Category: Stellato, F]] | + | [[Category: White TA]] |
- | [[Category: White, T A]] | + | [[Category: Yefanov O]] |
- | [[Category: Yefanov, O]] | + | [[Category: Yoon CH]] |
- | [[Category: Yoon, C H]] | + | |
- | [[Category: Hydrolase]]
| + | |
| Structural highlights
Function
LYSC_CHICK Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.[1]
Publication Abstract from PubMed
A new approach for collecting data from many hundreds of thousands of microcrystals using X-ray pulses from a free-electron laser has recently been developed. Referred to as serial crystallography, diffraction patterns are recorded at a constant rate as a suspension of protein crystals flows across the path of an X-ray beam. Events that by chance contain single-crystal diffraction patterns are retained, then indexed and merged to form a three-dimensional set of reflection intensities for structure determination. This approach relies upon several innovations: an intense X-ray beam; a fast detector system; a means to rapidly flow a suspension of crystals across the X-ray beam; and the computational infrastructure to process the large volume of data. Originally conceived for radiation-damage-free measurements with ultrafast X-ray pulses, the same methods can be employed with synchrotron radiation. As in powder diffraction, the averaging of thousands of observations per Bragg peak may improve the ratio of signal to noise of low-dose exposures. Here, it is shown that this paradigm can be implemented for room-temperature data collection using synchrotron radiation and exposure times of less than 3 ms. Using lysozyme microcrystals as a model system, over 40 000 single-crystal diffraction patterns were obtained and merged to produce a structural model that could be refined to 2.1 A resolution. The resulting electron density is in excellent agreement with that obtained using standard X-ray data collection techniques. With further improvements the method is well suited for even shorter exposures at future and upgraded synchrotron radiation facilities that may deliver beams with 1000 times higher brightness than they currently produce.
Room-temperature macromolecular serial crystallography using synchrotron radiation.,Stellato F, Oberthur D, Liang M, Bean R, Gati C, Yefanov O, Barty A, Burkhardt A, Fischer P, Galli L, Kirian RA, Meyer J, Panneerselvam S, Yoon CH, Chervinskii F, Speller E, White TA, Betzel C, Meents A, Chapman HN IUCrJ. 2014 May 30;1(Pt 4):204-12. doi: 10.1107/S2052252514010070. eCollection, 2014 Jul 1. PMID:25075341[2]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Maehashi K, Matano M, Irisawa T, Uchino M, Kashiwagi Y, Watanabe T. Molecular characterization of goose- and chicken-type lysozymes in emu (Dromaius novaehollandiae): evidence for extremely low lysozyme levels in emu egg white. Gene. 2012 Jan 15;492(1):244-9. doi: 10.1016/j.gene.2011.10.021. Epub 2011 Oct, 25. PMID:22044478 doi:10.1016/j.gene.2011.10.021
- ↑ Stellato F, Oberthur D, Liang M, Bean R, Gati C, Yefanov O, Barty A, Burkhardt A, Fischer P, Galli L, Kirian RA, Meyer J, Panneerselvam S, Yoon CH, Chervinskii F, Speller E, White TA, Betzel C, Meents A, Chapman HN. Room-temperature macromolecular serial crystallography using synchrotron radiation. IUCrJ. 2014 May 30;1(Pt 4):204-12. doi: 10.1107/S2052252514010070. eCollection, 2014 Jul 1. PMID:25075341 doi:http://dx.doi.org/10.1107/S2052252514010070
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