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| ==Crystal structure of uncleaved guinea pig L-asparaginase type III== | | ==Crystal structure of uncleaved guinea pig L-asparaginase type III== |
- | <StructureSection load='4o47' size='340' side='right' caption='[[4o47]], [[Resolution|resolution]] 1.90Å' scene=''> | + | <StructureSection load='4o47' size='340' side='right'caption='[[4o47]], [[Resolution|resolution]] 1.90Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[4o47]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Cavpo Cavpo]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4O47 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4O47 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4o47]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Cavia_porcellus Cavia porcellus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4O47 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4O47 FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4o48|4o48]]</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4o47 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4o47 OCA], [https://pdbe.org/4o47 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4o47 RCSB], [https://www.ebi.ac.uk/pdbsum/4o47 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4o47 ProSAT]</span></td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">LOC100713636 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10141 CAVPO])</td></tr>
| + | |
- | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Asparaginase Asparaginase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.1 3.5.1.1] </span></td></tr>
| + | |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4o47 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4o47 OCA], [http://pdbe.org/4o47 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4o47 RCSB], [http://www.ebi.ac.uk/pdbsum/4o47 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4o47 ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Asparaginase]] | + | [[Category: Cavia porcellus]] |
- | [[Category: Cavpo]] | + | [[Category: Large Structures]] |
- | [[Category: Lavie, A]] | + | [[Category: Lavie A]] |
- | [[Category: Schalk, A M]] | + | [[Category: Schalk AM]] |
- | [[Category: Hydrolase]]
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| Structural highlights
Publication Abstract from PubMed
We investigated whether an uncharacterized protein from guinea pig could be the enzyme behind Kidd's serendipitous discovery, made over 60 years ago, that guinea pig serum has cell killing ability. It has been long known that an enzyme with l-asparaginase activity is responsible for cell killing, although astonishingly, its identity remains unclear. Bacterial asparaginases with similar cell killing properties have since become a mainstay therapy of certain cancers such as acute lymphoblastic leukemia. By hydrolyzing asparagine to aspartate and ammonia, these drugs deplete the asparagine present in the blood, killing cancer cells that rely on extracellular asparagine uptake for survival. However, bacterial asparaginases can elicit an adverse immune response. We propose that replacement of bacterial enzymes with the guinea pig asparaginase responsible for serum activity, by its virtue of being more closely related to human enzymes, will be less immunogenic. To this goal, we investigated whether an uncharacterized protein from guinea pig with putative asparaginase activity, which we call gpASNase3, could be that enzyme. We examined its self-activation process (gpASNase3 requires autocleavage to become active), kinetically characterized it for asparaginase and beta-aspartyl dipeptidase activity, and elucidated its crystal structure in both the uncleaved and cleaved states. This work reveals that gpASNase3 is not the enzyme responsible for the antitumor effects of guinea pig serum. It exhibits a low affinity for asparagine as measured by a high Michaelis constant, KM, in the millimolar range, in contrast to the low KM (micromolar range) required for asparaginase to be effective as an anticancer agent.
Structural and Kinetic Characterization of Guinea Pig l-Asparaginase Type III.,Schalk AM, Lavie A Biochemistry. 2014 Apr 7. PMID:24669941[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Schalk AM, Lavie A. Structural and Kinetic Characterization of Guinea Pig l-Asparaginase Type III. Biochemistry. 2014 Apr 7. PMID:24669941 doi:http://dx.doi.org/10.1021/bi401692v
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