7qr6
From Proteopedia
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==Stilbene dioxygenase (NOV1) from Novosphingobium aromaticivorans: Ser283Phe mutant== | ==Stilbene dioxygenase (NOV1) from Novosphingobium aromaticivorans: Ser283Phe mutant== | ||
- | <StructureSection load='7qr6' size='340' side='right'caption='[[7qr6]]' scene=''> | + | <StructureSection load='7qr6' size='340' side='right'caption='[[7qr6]], [[Resolution|resolution]] 2.90Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7QR6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7QR6 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[7qr6]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Novosphingobium_aromaticivorans Novosphingobium aromaticivorans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7QR6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7QR6 FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7qr6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7qr6 OCA], [https://pdbe.org/7qr6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7qr6 RCSB], [https://www.ebi.ac.uk/pdbsum/7qr6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7qr6 ProSAT]</span></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene></td></tr> |
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7qr6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7qr6 OCA], [https://pdbe.org/7qr6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7qr6 RCSB], [https://www.ebi.ac.uk/pdbsum/7qr6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7qr6 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/Q2GA76_NOVAD Q2GA76_NOVAD] | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Biocatalysis is a key tool in both green chemistry and biorefinery fields. NOV1 is a dioxygenase that catalyzes the one-step, coenzyme-free oxidation of isoeugenol into vanillin and holds enormous biotechnological potential for the complete valorization of lignin as a sustainable starting material for biobased chemicals, polymers, and materials. This study integrates computational, kinetic, structural, and biophysical approaches to characterize a new NOV1 variant featuring improved activity and stability compared to those of the wild type. The S283F replacement results in a 2-fold increased turnover rate (kcat) for isoeugenol and a 4-fold higher catalytic efficiency (kcat/Km) for molecular oxygen compared to those of the wild type. Furthermore, the variant exhibits a half-life that is 20-fold higher than that of the wild type, which most likely relates to the enhanced stabilization of the iron cofactor in the active site. Molecular dynamics supports this view, revealing that the S283F replacement decreases the optimal pKa and favors conformations of the iron-coordinating histidines compatible with an increased level of binding to iron. Importantly, whole cells containing the S283F variant catalyze the conversion of </=100 mM isoeugenol to vanillin, yielding >99% molar conversion yields within 24 h. This integrative strategy provided a new enzyme for biotechnological applications and mechanistic insights that will facilitate the future design of robust and efficient biocatalysts. | ||
+ | |||
+ | Rationally Guided Improvement of NOV1 Dioxygenase for the Conversion of Lignin-Derived Isoeugenol to Vanillin.,De Simone M, Alvigini L, Alonso-Cotchico L, Brissos V, Caroli J, Lucas MF, Monza E, Melo EP, Mattevi A, Martins LO Biochemistry. 2022 Jun 10. doi: 10.1021/acs.biochem.2c00168. PMID:35687874<ref>PMID:35687874</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 7qr6" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
+ | [[Category: Novosphingobium aromaticivorans]] | ||
[[Category: Alvigini L]] | [[Category: Alvigini L]] | ||
[[Category: Mattevi A]] | [[Category: Mattevi A]] |
Revision as of 06:53, 25 January 2023
Stilbene dioxygenase (NOV1) from Novosphingobium aromaticivorans: Ser283Phe mutant
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