This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.

4oa3

From Proteopedia

(Difference between revisions)

Jump to: navigation, search

Revision as of 07:13, 25 January 2023

Crystal structure of the BA42 protein from BIZIONIA ARGENTINENSIS

Structural highlights

4oa3 is a 1 chain structure with sequence from Bizionia argentinensis JUB59. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

G2EA45_9FLAO

Publication Abstract from PubMed

The structure of the BA42 protein belonging to the Antarctic flavobacterium Bizionia argentinensis was determined by Nuclear Magnetic Resonance and X-ray crystallography. This is the first structure of a member of the PF04536 family comprised of a stand-alone TPM domain. The structure reveals a new topological variant of the four beta-strands constituting the central beta-sheet of the alphabetaalpha architecture and a double metal binding site stabilizing a pair of crossing loops, not observed in previous structures of proteins belonging to this family. BA42 shows differences in structure and dynamics in the presence or absence of bound metals. The affinity for divalent metal ions is close to that observed in proteins that modulate their activity as a function of metal concentration, anticipating a possible role for BA42. (c) Proteins 2014;. (c) 2014 Wiley Periodicals, Inc.

Solution and crystal structure of BA42, a protein from the Antarctic bacterium Bizionia argentinensis comprised of a stand-alone TPM domain.,Aran M, Smal C, Pellizza L, Gallo M, Otero LH, Klinke S, Goldbaum FA, Ithurralde ER, Bercovich A, Mac Cormack WP, Turjanski AG, Cicero DO Proteins. 2014 Aug 13. doi: 10.1002/prot.24667. PMID:25116514^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Aran M, Smal C, Pellizza L, Gallo M, Otero LH, Klinke S, Goldbaum FA, Ithurralde ER, Bercovich A, Mac Cormack WP, Turjanski AG, Cicero DO. Solution and crystal structure of BA42, a protein from the Antarctic bacterium Bizionia argentinensis comprised of a stand-alone TPM domain. Proteins. 2014 Aug 13. doi: 10.1002/prot.24667. PMID:25116514 doi:http://dx.doi.org/10.1002/prot.24667

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 See Also
5 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4oa3"

@@ Line 3: / Line 3: @@
 <StructureSection load='4oa3' size='340' side='right'caption='[[4oa3]], [[Resolution|resolution]] 1.39&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[4oa3]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bizionia_argentinensis_jub59 Bizionia argentinensis jub59]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4OA3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4OA3 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[4oa3]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bizionia_argentinensis_JUB59 Bizionia argentinensis JUB59]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4OA3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4OA3 FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2lt2|2lt2]]</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4oa3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4oa3 OCA], [https://pdbe.org/4oa3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4oa3 RCSB], [https://www.ebi.ac.uk/pdbsum/4oa3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4oa3 ProSAT]</span></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BZARG_1551 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1046627 Bizionia argentinensis JUB59])</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4oa3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4oa3 OCA], [http://pdbe.org/4oa3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4oa3 RCSB], [http://www.ebi.ac.uk/pdbsum/4oa3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4oa3 ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/G2EA45_9FLAO G2EA45_9FLAO]
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 27: / Line 27: @@
 __TOC__
 </StructureSection>
-[[Category: Bizionia argentinensis jub59]]
+[[Category: Bizionia argentinensis JUB59]]
 [[Category: Large Structures]]
-[[Category: Aran, M]]
+[[Category: Aran M]]
-[[Category: Cicero, D]]
+[[Category: Cicero D]]
-[[Category: Goldbaum, F A]]
+[[Category: Goldbaum FA]]
-[[Category: Klinke, S]]
+[[Category: Klinke S]]
-[[Category: Otero, L H]]
+[[Category: Otero LH]]
-[[Category: Pellizza, L]]
+[[Category: Pellizza L]]
-[[Category: Ba42]]
-[[Category: Unknown function]]

4oa3

From Proteopedia

Revision as of 07:13, 25 January 2023

Crystal structure of the BA42 protein from BIZIONIA ARGENTINENSIS

Structural highlights

Function

Publication Abstract from PubMed

See Also

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

Views

Personal tools

Navigation

Search

Toolbox