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| ==Crystal Structure of SYG-2 D4== | | ==Crystal Structure of SYG-2 D4== |
- | <StructureSection load='4ofk' size='340' side='right' caption='[[4ofk]], [[Resolution|resolution]] 1.80Å' scene=''> | + | <StructureSection load='4ofk' size='340' side='right'caption='[[4ofk]], [[Resolution|resolution]] 1.80Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[4ofk]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Caeel Caeel]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4OFK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4OFK FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4ofk]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Caenorhabditis_elegans Caenorhabditis elegans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4OFK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4OFK FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4of0|4of0]], [[4of3|4of3]], [[4of6|4of6]], [[4of7|4of7]], [[4of8|4of8]], [[4ofd|4ofd]], [[4ofi|4ofi]], [[4ofp|4ofp]], [[4ofy|4ofy]]</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ofk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ofk OCA], [https://pdbe.org/4ofk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ofk RCSB], [https://www.ebi.ac.uk/pdbsum/4ofk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ofk ProSAT]</span></td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">C26G2.1, CELE_C26G2.1, syg-2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=6239 CAEEL])</td></tr>
| + | |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ofk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ofk OCA], [http://pdbe.org/4ofk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4ofk RCSB], [http://www.ebi.ac.uk/pdbsum/4ofk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4ofk ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/SYG2_CAEEL SYG2_CAEEL] Cell adhesion protein (PubMed:15035988). Determines synapse formation (PubMed:15035988, PubMed:21858180, PubMed:24485456). Required for correct localization of syg-1 at synaptic sites (PubMed:15035988).<ref>PMID:15035988</ref> <ref>PMID:21858180</ref> <ref>PMID:24485456</ref> |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Caeel]] | + | [[Category: Caenorhabditis elegans]] |
- | [[Category: Borek, D]] | + | [[Category: Large Structures]] |
- | [[Category: Garcia, K C]] | + | [[Category: Borek D]] |
- | [[Category: Otwinowski, Z]] | + | [[Category: Garcia KC]] |
- | [[Category: Ozkan, E]] | + | [[Category: Otwinowski Z]] |
- | [[Category: Cell adhesion]]
| + | [[Category: Ozkan E]] |
- | [[Category: Extracellular]]
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- | [[Category: Immunoglobulin superfamily]]
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- | [[Category: Membrane]]
| + | |
- | [[Category: N-linked glycosylation]]
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- | [[Category: Protein binding]]
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- | [[Category: Signaling protein]]
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- | [[Category: Synaptogenesis]]
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| Structural highlights
Function
SYG2_CAEEL Cell adhesion protein (PubMed:15035988). Determines synapse formation (PubMed:15035988, PubMed:21858180, PubMed:24485456). Required for correct localization of syg-1 at synaptic sites (PubMed:15035988).[1] [2] [3]
Publication Abstract from PubMed
SYG-1 and SYG-2 are multipurpose cell adhesion molecules (CAMs) that have evolved across all major animal taxa to participate in diverse physiological functions, ranging from synapse formation to formation of the kidney filtration barrier. In the crystal structures of several SYG-1 and SYG-2 orthologs and their complexes, we find that SYG-1 orthologs homodimerize through a common, bispecific interface that similarly mediates an unusual orthogonal docking geometry in the heterophilic SYG-1/SYG-2 complex. C. elegans SYG-1's specification of proper synapse formation in vivo closely correlates with the heterophilic complex affinity, which appears to be tuned for optimal function. Furthermore, replacement of the interacting domains of SYG-1 and SYG-2 with those from CAM complexes that assume alternative docking geometries or the introduction of segmental flexibility compromised synaptic function. These results suggest that SYG extracellular complexes do not simply act as "molecular velcro" and that their distinct structural features are important in instructing synaptogenesis. PAPERFLICK:
Extracellular Architecture of the SYG-1/SYG-2 Adhesion Complex Instructs Synaptogenesis.,Ozkan E, Chia PH, Wang RR, Goriatcheva N, Borek D, Otwinowski Z, Walz T, Shen K, Garcia KC Cell. 2014 Jan 30;156(3):482-94. doi: 10.1016/j.cell.2014.01.004. PMID:24485456[4]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Shen K, Fetter RD, Bargmann CI. Synaptic specificity is generated by the synaptic guidepost protein SYG-2 and its receptor, SYG-1. Cell. 2004 Mar 19;116(6):869-81. doi: 10.1016/s0092-8674(04)00251-x. PMID:15035988 doi:http://dx.doi.org/10.1016/s0092-8674(04)00251-x
- ↑ Wanner N, Noutsou F, Baumeister R, Walz G, Huber TB, Neumann-Haefelin E. Functional and spatial analysis of C. elegans SYG-1 and SYG-2, orthologs of the Neph/nephrin cell adhesion module directing selective synaptogenesis. PLoS One. 2011;6(8):e23598. doi: 10.1371/journal.pone.0023598. Epub 2011 Aug 15. PMID:21858180 doi:http://dx.doi.org/10.1371/journal.pone.0023598
- ↑ Ozkan E, Chia PH, Wang RR, Goriatcheva N, Borek D, Otwinowski Z, Walz T, Shen K, Garcia KC. Extracellular Architecture of the SYG-1/SYG-2 Adhesion Complex Instructs Synaptogenesis. Cell. 2014 Jan 30;156(3):482-94. doi: 10.1016/j.cell.2014.01.004. PMID:24485456 doi:http://dx.doi.org/10.1016/j.cell.2014.01.004
- ↑ Ozkan E, Chia PH, Wang RR, Goriatcheva N, Borek D, Otwinowski Z, Walz T, Shen K, Garcia KC. Extracellular Architecture of the SYG-1/SYG-2 Adhesion Complex Instructs Synaptogenesis. Cell. 2014 Jan 30;156(3):482-94. doi: 10.1016/j.cell.2014.01.004. PMID:24485456 doi:http://dx.doi.org/10.1016/j.cell.2014.01.004
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