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4p47

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Revision as of 12:40, 1 February 2023

CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM OCHROBACTRUM ANTHROPI (Oant_4429), TARGET EFI-510151, C-TERMIUS BOUND IN LIGAND BINDING POCKET

Structural highlights

4p47 is a 1 chain structure with sequence from Brucella anthropi ATCC 49188. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

A6X7C5_BRUA4

Publication Abstract from PubMed

The rate at which genome sequencing data is accruing demands enhanced methods for functional annotation and metabolism discovery. Solute binding proteins (SBPs) facilitate the transport of the first reactant in a metabolic pathway, thereby constraining the regions of chemical space and the chemistries that must be considered for pathway reconstruction. We describe high-throughput protein production and differential scanning fluorimetry platforms, which enabled the screening of 158 SBPs against a 189 component library specifically tailored for this class of proteins. Like all screening efforts, this approach is limited by the practical constraints imposed by construction of the library, i.e., we can study only those metabolites that are known to exist and which can be made in sufficient quantities for experimentation. To move beyond these inherent limitations, we illustrate the promise of crystallographic- and mass spectrometric-based approaches for the unbiased use of entire metabolomes as screening libraries. Together, our approaches identified 40 new SBP ligands, generated experiment-based annotations for 2084 SBPs in 71 isofunctional clusters, and defined numerous metabolic pathways, including novel catabolic pathways for the utilization of ethanolamine as sole nitrogen source and the use of d-Ala-d-Ala as sole carbon source. These efforts begin to define an integrated strategy for realizing the full value of amassing genome sequence data.

Experimental strategies for functional annotation and metabolism discovery: targeted screening of solute binding proteins and unbiased panning of metabolomes.,Vetting MW, Al-Obaidi N, Zhao S, San Francisco B, Kim J, Wichelecki DJ, Bouvier JT, Solbiati JO, Vu H, Zhang X, Rodionov DA, Love JD, Hillerich BS, Seidel RD, Quinn RJ, Osterman AL, Cronan JE, Jacobson MP, Gerlt JA, Almo SC Biochemistry. 2015 Jan 27;54(3):909-31. doi: 10.1021/bi501388y. Epub 2015 Jan 16. PMID:25540822^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Vetting MW, Al-Obaidi N, Zhao S, San Francisco B, Kim J, Wichelecki DJ, Bouvier JT, Solbiati JO, Vu H, Zhang X, Rodionov DA, Love JD, Hillerich BS, Seidel RD, Quinn RJ, Osterman AL, Cronan JE, Jacobson MP, Gerlt JA, Almo SC. Experimental strategies for functional annotation and metabolism discovery: targeted screening of solute binding proteins and unbiased panning of metabolomes. Biochemistry. 2015 Jan 27;54(3):909-31. doi: 10.1021/bi501388y. Epub 2015 Jan 16. PMID:25540822 doi:http://dx.doi.org/10.1021/bi501388y

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 See Also
5 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4p47"

@@ Line 3: / Line 3: @@
 <StructureSection load='4p47' size='340' side='right'caption='[[4p47]], [[Resolution|resolution]] 1.30&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[4p47]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Ocha4 Ocha4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4P47 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4P47 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[4p47]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Brucella_anthropi_ATCC_49188 Brucella anthropi ATCC 49188]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4P47 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4P47 FirstGlance]. <br>
-</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Oant_4429 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=439375 OCHA4])</td></tr>
+</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4p47 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4p47 OCA], [https://pdbe.org/4p47 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4p47 RCSB], [https://www.ebi.ac.uk/pdbsum/4p47 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4p47 ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4p47 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4p47 OCA], [http://pdbe.org/4p47 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4p47 RCSB], [http://www.ebi.ac.uk/pdbsum/4p47 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4p47 ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/A6X7C5_BRUA4 A6X7C5_BRUA4]
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 16: / Line 17: @@
 </div>
 <div class="pdbe-citations 4p47" style="background-color:#fffaf0;"></div>
+==See Also==
+*[[TRAP dicarboxylate transporter%2C DctP subunit|TRAP dicarboxylate transporter%2C DctP subunit]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
+[[Category: Brucella anthropi ATCC 49188]]
 [[Category: Large Structures]]
-[[Category: Ocha4]]
+[[Category: Al Obaidi NF]]
-[[Category: Almo, S C]]
+[[Category: Almo SC]]
-[[Category: Attonito, J D]]
+[[Category: Attonito JD]]
-[[Category: Chowdhury, S]]
+[[Category: Chowdhury S]]
-[[Category: EFI, Enzyme Function Initiative]]
+[[Category: Evans B]]
-[[Category: Evans, B]]
+[[Category: Gerlt JA]]
-[[Category: Gerlt, J A]]
+[[Category: Hillerich B]]
-[[Category: Glenn, A Scott]]
+[[Category: Love J]]
-[[Category: Hillerich, B]]
+[[Category: Morisco LL]]
-[[Category: Love, J]]
+[[Category: Scott Glenn A]]
-[[Category: Morisco, L L]]
+[[Category: Seidel RD]]
-[[Category: Obaidi, N F.Al]]
+[[Category: Stead M]]
-[[Category: Seidel, R D]]
+[[Category: Vetting MW]]
-[[Category: Stead, M]]
+[[Category: Wasserman SR]]
-[[Category: Vetting, M W]]
+[[Category: Whalen KL]]
-[[Category: Wasserman, S R]]
-[[Category: Whalen, K L]]
-[[Category: Efi]]
-[[Category: Enzyme function initiative]]
-[[Category: Solute-binding protein]]
-[[Category: Structural genomic]]
-[[Category: Trap periplasmic solute binding family]]

4p47

From Proteopedia

Revision as of 12:40, 1 February 2023

CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM OCHROBACTRUM ANTHROPI (Oant_4429), TARGET EFI-510151, C-TERMIUS BOUND IN LIGAND BINDING POCKET

Structural highlights

Function

Publication Abstract from PubMed

See Also

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

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