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| <StructureSection load='4pb6' size='340' side='right'caption='[[4pb6]], [[Resolution|resolution]] 8.00Å' scene=''> | | <StructureSection load='4pb6' size='340' side='right'caption='[[4pb6]], [[Resolution|resolution]] 8.00Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[4pb6]] is a 20 chain structure with sequence from [http://en.wikipedia.org/wiki/Fcv Fcv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PB6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4PB6 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4pb6]] is a 20 chain structure with sequence from [https://en.wikipedia.org/wiki/Feline_calicivirus Feline calicivirus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PB6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4PB6 FirstGlance]. <br> |
- | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">VP1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11978 FCV])</td></tr> | + | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4pb6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4pb6 OCA], [https://pdbe.org/4pb6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4pb6 RCSB], [https://www.ebi.ac.uk/pdbsum/4pb6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4pb6 ProSAT]</span></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4pb6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4pb6 OCA], [http://pdbe.org/4pb6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4pb6 RCSB], [http://www.ebi.ac.uk/pdbsum/4pb6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4pb6 ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/A0A0J9X1Z3_9CALI A0A0J9X1Z3_9CALI] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| </div> | | </div> |
| <div class="pdbe-citations 4pb6" style="background-color:#fffaf0;"></div> | | <div class="pdbe-citations 4pb6" style="background-color:#fffaf0;"></div> |
| + | |
| + | ==See Also== |
| + | *[[Virus coat proteins 3D structures|Virus coat proteins 3D structures]] |
| == References == | | == References == |
| <references/> | | <references/> |
| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Fcv]] | + | [[Category: Feline calicivirus]] |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Buisson, M]] | + | [[Category: Buisson M]] |
- | [[Category: Burmeister, W P]] | + | [[Category: Burmeister WP]] |
- | [[Category: Viral capsid protein]]
| + | |
- | [[Category: Virus]]
| + | |
- | [[Category: Virus-like particle]]
| + | |
| Structural highlights
Function
A0A0J9X1Z3_9CALI
Publication Abstract from PubMed
The vesivirus feline calicivirus (FCV) is a positive strand RNA virus encapsidated by an icosahedral T=3 shell formed by the viral VP1 protein. Upon its expression in the insect cell - baculovirus system in the context of vaccine development, two types of virus-like particles (VLPs) were formed, a majority built of 60 subunits (T=1) and a minority probably built of 180 subunits (T=3). The structure of the small particles was determined by x-ray crystallography at 0.8 nm resolution helped by cryo-electron microscopy in order to understand their formation. Cubic crystals belonged to space group P213. Their self-rotation function showed the presence of an octahedral pseudo-symmetry similar to the one described previously by Agerbandje and co-workers for human parvovirus VLPs. The crystal structure could be solved starting from the published VP1 structure in the context of the T=3 viral capsid. In contrast to viral capsids, where the capsomers are interlocked by the exchange of the N-terminal arm (NTA) domain, this domain is disordered in the T=1 capsid of the VLPs. Furthermore it is prone to proteolytic cleavage. The relative orientation of P (protrusion) and S (shell) domains is alerted so as to fit VP1 to the smaller T=1 particle whereas the intermolecular contacts around 2-fold, 3-fold and 5-fold axes are conserved. By consequence the surface of the VLP is very similar compared to the viral capsid and suggests a similar antigenicity. The knowledge of the structure of the VLPs will help to improve their stability, in respect to a use for vaccination.
Structure determination of feline calicivirus virus-like particles in the context of a pseudo-octahedral arrangement.,Burmeister WP, Buisson M, Estrozi LF, Schoehn G, Billet O, Hannas Z, Sigoillot C, Poulet H PLoS One. 2015 Mar 20;10(3):e0119289. doi: 10.1371/journal.pone.0119289., eCollection 2015. PMID:25794153[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Burmeister WP, Buisson M, Estrozi LF, Schoehn G, Billet O, Hannas Z, Sigoillot C, Poulet H. Structure determination of feline calicivirus virus-like particles in the context of a pseudo-octahedral arrangement. PLoS One. 2015 Mar 20;10(3):e0119289. doi: 10.1371/journal.pone.0119289., eCollection 2015. PMID:25794153 doi:http://dx.doi.org/10.1371/journal.pone.0119289
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