This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
4pii
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
==Crystal structure of hypothetical protein PF0907 from pyrococcus furiosus solved by sulfur SAD using Swiss light source data== | ==Crystal structure of hypothetical protein PF0907 from pyrococcus furiosus solved by sulfur SAD using Swiss light source data== | ||
| - | <StructureSection load='4pii' size='340' side='right' caption='[[4pii]], [[Resolution|resolution]] 2.17Å' scene=''> | + | <StructureSection load='4pii' size='340' side='right'caption='[[4pii]], [[Resolution|resolution]] 2.17Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[4pii]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[4pii]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_furiosus_DSM_3638 Pyrococcus furiosus DSM 3638]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PII OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4PII FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene></td></tr> |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4pii FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4pii OCA], [https://pdbe.org/4pii PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4pii RCSB], [https://www.ebi.ac.uk/pdbsum/4pii PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4pii ProSAT]</span></td></tr> | |
| - | + | ||
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | |
</table> | </table> | ||
== Function == | == Function == | ||
| - | [ | + | [https://www.uniprot.org/uniprot/AGOG_PYRFU AGOG_PYRFU] DNA repair enzyme that is part of the base excision repair (BER) pathway; protects from oxidative damage by removing the major product of DNA oxidation, 8-oxoguanine (GO), from single- and double-stranded DNA substrates (By similarity). |
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
| Line 20: | Line 18: | ||
</div> | </div> | ||
<div class="pdbe-citations 4pii" style="background-color:#fffaf0;"></div> | <div class="pdbe-citations 4pii" style="background-color:#fffaf0;"></div> | ||
| + | |||
| + | ==See Also== | ||
| + | *[[DNA glycosylase 3D structures|DNA glycosylase 3D structures]] | ||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: Chen | + | [[Category: Pyrococcus furiosus DSM 3638]] |
| - | [[Category: Olieric | + | [[Category: Chen L]] |
| - | [[Category: Panepucci | + | [[Category: Olieric V]] |
| - | [[Category: Rose | + | [[Category: Panepucci E]] |
| - | + | [[Category: Rose JP]] | |
| - | [[Category: Waltersperger | + | [[Category: Waltersperger S]] |
| - | [[Category: Wang | + | [[Category: Wang BC]] |
| - | [[Category: Wang | + | [[Category: Wang M]] |
| - | [[Category: Weinert | + | [[Category: Weinert T]] |
| - | + | ||
| - | + | ||
| - | + | ||
Revision as of 13:06, 1 February 2023
Crystal structure of hypothetical protein PF0907 from pyrococcus furiosus solved by sulfur SAD using Swiss light source data
| |||||||||||
