2lml

From Proteopedia

(Difference between revisions)

Current revision

Solution NMR structure of holo acyl carrier protein from geobacter Metallireducens refined with nh rdcs, Northeast Structural Genomics consortium target gmr141

Structural highlights

2lml is a 1 chain structure with sequence from Geobacter metallireducens GS-15. This structure supersedes the now removed PDB entries 2kwm, 2kjs and 2kci. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

Q39T60_GEOMG

Publication Abstract from PubMed

GmACP3 from Geobacter metallireducens is a specialized acyl carrier protein (ACP) whose gene, gmet_2339, is located near genes encoding many proteins involved in lipopolysaccharide (LPS) biosynthesis, indicating a likely function for GmACP3 in LPS production. By overexpression in Escherichia coli, about 50% holo-GmACP3 and 50% apo-GmACP3 were obtained. Apo-GmACP3 exhibited slow precipitation and non-monomeric behavior by (15)N NMR relaxation measurements. Addition of 4'-phosphopantetheine (4'-PP) via enzymatic conversion by E. coli holo-ACP synthase resulted in stable >95% holo-GmACP3 that was characterized as monomeric by (15)N relaxation measurements and had no indication of conformational exchange. We have determined a high-resolution solution structure of holo-GmACP3 by standard NMR methods, including refinement with two sets of NH residual dipolar couplings, allowing for a detailed structural analysis of the interactions between 4'-PP and GmACP3. Whereas the overall four helix bundle topology is similar to previously solved ACP structures, this structure has unique characteristics, including an ordered 4'-PP conformation that places the thiol at the entrance to a central hydrophobic cavity near a conserved hydrogen-bonded Trp-His pair. These residues are part of a conserved WDSLxH/N motif found in GmACP3 and its orthologs. The helix locations and the large hydrophobic cavity are more similar to medium- and long-chain acyl-ACPs than to other apo- and holo-ACP structures. Taken together, structural characterization along with bioinformatic analysis of nearby genes suggests that GmACP3 is involved in lipid A acylation, possibly by atypical long-chain hydroxy fatty acids, and potentially is involved in synthesis of secondary metabolites.

Solution structure of 4'-phosphopantetheine - GmACP3 from Geobacter metallireducens: a specialized acyl carrier protein with atypical structural features and a putative role in lipopolysaccharide biosynthesis.,Ramelot TA, Smola MJ, Lee HW, Ciccosanti C, Hamilton K, Acton TB, Xiao R, Everett JK, Prestegard JH, Montelione GT, Kennedy MA Biochemistry. 2011 Mar 8;50(9):1442-53. Epub 2011 Feb 14. PMID:21235239^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Ramelot TA, Smola MJ, Lee HW, Ciccosanti C, Hamilton K, Acton TB, Xiao R, Everett JK, Prestegard JH, Montelione GT, Kennedy MA. Solution structure of 4'-phosphopantetheine - GmACP3 from Geobacter metallireducens: a specialized acyl carrier protein with atypical structural features and a putative role in lipopolysaccharide biosynthesis. Biochemistry. 2011 Mar 8;50(9):1442-53. Epub 2011 Feb 14. PMID:21235239 doi:10.1021/bi101932s

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2lml"

@@ Line 1: / Line 1: @@
 ==Solution NMR structure of holo acyl carrier protein from geobacter Metallireducens refined with nh rdcs, Northeast Structural Genomics consortium target gmr141==
-<StructureSection load='2lml' size='340' side='right'caption='[[2lml]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
+<StructureSection load='2lml' size='340' side='right'caption='[[2lml]]' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2lml]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Geomg Geomg]. This structure supersedes the now removed PDB entries [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2kwm 2kwm], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2kjs 2kjs] and [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2kci 2kci]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LML OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2LML FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2lml]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Geobacter_metallireducens_GS-15 Geobacter metallireducens GS-15]. This structure supersedes the now removed PDB entries [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2kwm 2kwm], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2kjs 2kjs] and [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2kci 2kci]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LML OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2LML FirstGlance]. <br>
 </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PNS:4-PHOSPHOPANTETHEINE'>PNS</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Gmet_2339 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=269799 GEOMG])</td></tr>
 <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2lml FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2lml OCA], [https://pdbe.org/2lml PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2lml RCSB], [https://www.ebi.ac.uk/pdbsum/2lml PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2lml ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q39T60_GEOMG Q39T60_GEOMG]
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 21: / Line 22: @@
 __TOC__
 </StructureSection>
-[[Category: Geomg]]
+[[Category: Geobacter metallireducens GS-15]]
 [[Category: Large Structures]]
-[[Category: Acton, T B]]
+[[Category: Acton TB]]
-[[Category: Ciccosanti, C]]
+[[Category: Ciccosanti C]]
-[[Category: Everett, J K]]
+[[Category: Everett JK]]
-[[Category: Foote, E L]]
+[[Category: Foote EL]]
-[[Category: Hamilton, K]]
+[[Category: Hamilton K]]
-[[Category: Kennedy, M A]]
+[[Category: Kennedy MA]]
-[[Category: Lee, H]]
+[[Category: Lee H]]
-[[Category: Montelione, G T]]
+[[Category: Montelione GT]]
-[[Category: Structural genomic]]
+[[Category: Nair R]]
-[[Category: Nair, R]]
+[[Category: Prestegard JH]]
-[[Category: Prestegard, J H]]
+[[Category: Ramelot TA]]
-[[Category: Ramelot, T A]]
+[[Category: Rost B]]
-[[Category: Rost, B]]
+[[Category: Smola MJ]]
-[[Category: Smola, M J]]
+[[Category: Swapna G]]
-[[Category: Swapna, G]]
+[[Category: Xiao R]]
-[[Category: Xiao, R]]
+[[Category: Zhao L]]
-[[Category: Zhao, L]]
-[[Category: Nesg]]
-[[Category: PSI, Protein structure initiative]]
-[[Category: Psi-biology]]
-[[Category: Transport protein]]

2lml

From Proteopedia

Current revision

Solution NMR structure of holo acyl carrier protein from geobacter Metallireducens refined with nh rdcs, Northeast Structural Genomics consortium target gmr141

Structural highlights

Function

Publication Abstract from PubMed

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

Views

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