This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4qca

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 3: Line 3:
<StructureSection load='4qca' size='340' side='right'caption='[[4qca]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
<StructureSection load='4qca' size='340' side='right'caption='[[4qca]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4qca]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Vacca Vacca]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4QCA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4QCA FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4qca]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Vaccinia_virus_Ankara Vaccinia virus Ankara]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4QCA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4QCA FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4dof|4dof]], [[4dog|4dog]], [[4lzb|4lzb]], [[4irb|4irb]], [[4qc9|4qc9]], [[4qcb|4qcb]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4qca FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4qca OCA], [https://pdbe.org/4qca PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4qca RCSB], [https://www.ebi.ac.uk/pdbsum/4qca PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4qca ProSAT]</span></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ACAM3000_MVA_101, D4, MVA101R, UNG ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=126794 VACCA])</td></tr>
+
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Uracil-DNA_glycosylase Uracil-DNA glycosylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.2.27 3.2.2.27] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4qca FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4qca OCA], [http://pdbe.org/4qca PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4qca RCSB], [http://www.ebi.ac.uk/pdbsum/4qca PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4qca ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/UNG_VACCA UNG_VACCA]] Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. Also part of a heterodimeric processivity factor which potentiates the DNA polymerase activity. Binds to DNA.
+
[https://www.uniprot.org/uniprot/UNG_VACCW UNG_VACCW] Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. Also part of a heterodimeric processivity factor which potentiates the DNA polymerase activity. Binds to DNA (By similarity).
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 23: Line 20:
==See Also==
==See Also==
-
*[[DNA glycosylase|DNA glycosylase]]
+
*[[DNA glycosylase 3D structures|DNA glycosylase 3D structures]]
== References ==
== References ==
<references/>
<references/>
Line 29: Line 26:
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Uracil-DNA glycosylase]]
+
[[Category: Vaccinia virus Ankara]]
-
[[Category: Vacca]]
+
[[Category: Banerjee S]]
-
[[Category: Banerjee, S]]
+
[[Category: Chattopadhyay D]]
-
[[Category: Chattopadhyay, D]]
+
[[Category: Nash T]]
-
[[Category: Nash, T]]
+
[[Category: Nuth M]]
-
[[Category: Nuth, M]]
+
[[Category: Ricciardi R]]
-
[[Category: Ricciardi, R]]
+
[[Category: Sartmatova D]]
-
[[Category: Sartmatova, D]]
+
[[Category: Schormann N]]
-
[[Category: Schormann, N]]
+
-
[[Category: A20]]
+
-
[[Category: Component of processivity factor]]
+
-
[[Category: Dna]]
+
-
[[Category: Dna repair enzyme]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Poxvirus]]
+

Revision as of 11:23, 15 February 2023

Crystal structure of Vaccinia virus uracil-DNA glycosylase mutant R167AD4

PDB ID 4qca

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4qca"
Personal tools