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| | <StructureSection load='4qdj' size='340' side='right'caption='[[4qdj]], [[Resolution|resolution]] 1.60Å' scene=''> | | <StructureSection load='4qdj' size='340' side='right'caption='[[4qdj]], [[Resolution|resolution]] 1.60Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[4qdj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Syny3 Syny3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4QDJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4QDJ FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4qdj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Synechocystis_sp._PCC_6803_substr._Kazusa Synechocystis sp. PCC 6803 substr. Kazusa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4QDJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4QDJ FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SAM:S-ADENOSYLMETHIONINE'>SAM</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SAM:S-ADENOSYLMETHIONINE'>SAM</scene></td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4qdk|4qdk]]</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4qdj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4qdj OCA], [https://pdbe.org/4qdj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4qdj RCSB], [https://www.ebi.ac.uk/pdbsum/4qdj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4qdj ProSAT]</span></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">chlM, slr0525 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1111708 SYNY3])</td></tr>
| + | |
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Magnesium_protoporphyrin_IX_methyltransferase Magnesium protoporphyrin IX methyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.1.11 2.1.1.11] </span></td></tr>
| + | |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4qdj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4qdj OCA], [http://pdbe.org/4qdj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4qdj RCSB], [http://www.ebi.ac.uk/pdbsum/4qdj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4qdj ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | == Function == | | == Function == |
| - | [[http://www.uniprot.org/uniprot/CHLM_SYNY3 CHLM_SYNY3]] Converts Mg-protoporphyrin IX to Mg-protoporphyrin IX methylester using S-adenosyl-L-methionine as a cofactor. | + | [https://www.uniprot.org/uniprot/CHLM_SYNY3 CHLM_SYNY3] Converts Mg-protoporphyrin IX to Mg-protoporphyrin IX methylester using S-adenosyl-L-methionine as a cofactor. |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | </StructureSection> | | </StructureSection> |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Magnesium protoporphyrin IX methyltransferase]] | + | [[Category: Synechocystis sp. PCC 6803 substr. Kazusa]] |
| - | [[Category: Syny3]]
| + | [[Category: Chen X]] |
| - | [[Category: Chen, X]] | + | [[Category: Liu L]] |
| - | [[Category: Liu, L]] | + | [[Category: Wang X]] |
| - | [[Category: Wang, X]] | + | |
| - | [[Category: Magnesium protoporphyrin ix]]
| + | |
| - | [[Category: Methyltransferase]]
| + | |
| - | [[Category: S-adenosyl methionine]]
| + | |
| - | [[Category: Transferase]]
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| Structural highlights
Function
CHLM_SYNY3 Converts Mg-protoporphyrin IX to Mg-protoporphyrin IX methylester using S-adenosyl-L-methionine as a cofactor.
Publication Abstract from PubMed
Magnesium protoporphyrin IX O-methyltransferase (ChlM) catalyzes transfer of the methyl group from S-adenosylmethionine to the carboxyl group of the C13 propionate side chain of magnesium protoporphyrin IX. This reaction is the second committed step in chlorophyll biosynthesis from protoporphyrin IX. Here we report the crystal structures of ChlM from the cyanobacterium Synechocystis sp. PCC 6803 in complex with S-adenosylmethionine and S-adenosylhomocysteine at resolutions of 1.6 and 1.7 A, respectively. The structures illustrate the molecular basis for cofactor and substrate binding and suggest that conformational changes of the two "arm" regions may modulate binding and release of substrates/products to and from the active site. Tyr-28 and His-139 were identified to play essential roles for methyl transfer reaction but are not indispensable for cofactor/substrate binding. Based on these structural and functional findings, a catalytic model is proposed.
Structural insights into the catalytic mechanism of Synechocystis magnesium protoporphyrin IX O-methyltransferase (ChlM).,Chen X, Wang X, Feng J, Chen Y, Fang Y, Zhao S, Zhao A, Zhang M, Liu L J Biol Chem. 2014 Sep 12;289(37):25690-8. doi: 10.1074/jbc.M114.584920. Epub 2014, Jul 30. PMID:25077963[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Chen X, Wang X, Feng J, Chen Y, Fang Y, Zhao S, Zhao A, Zhang M, Liu L. Structural insights into the catalytic mechanism of Synechocystis magnesium protoporphyrin IX O-methyltransferase (ChlM). J Biol Chem. 2014 Sep 12;289(37):25690-8. doi: 10.1074/jbc.M114.584920. Epub 2014, Jul 30. PMID:25077963 doi:http://dx.doi.org/10.1074/jbc.M114.584920
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