Endonuclease 3D structures
From Proteopedia
(Difference between revisions)
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**[[2abk]], [[1ako]] - EcENN – ''Escherichia coli''<br /> | **[[2abk]], [[1ako]] - EcENN – ''Escherichia coli''<br /> | ||
**[[1orn]], [[1orp]], [[1p59]] - GsENN + DNA – ''Geobacillus stearothermophilus''<br /> | **[[1orn]], [[1orp]], [[1p59]] - GsENN + DNA – ''Geobacillus stearothermophilus''<br /> | ||
| - | **[[4unf]] – DrENN-1 – ''Deinococcus radiodurans'' <br /> | + | **[[4l0k]], [[4unf]] – DrENN-1 – ''Deinococcus radiodurans'' <br /> |
| + | **[[8a5c]], [[8a5f]] – DrENN-1 (mutant)<br /> | ||
**[[4uob]] – DrENN-3 <br /> | **[[4uob]] – DrENN-3 <br /> | ||
| + | **[[8a5g]] – DrENN-3 (mutant)<br /> | ||
*ENN-IV | *ENN-IV | ||
| Line 36: | Line 38: | ||
**[[1xp3]] - ENN – ''Bacillus anthracis''<br /> | **[[1xp3]] - ENN – ''Bacillus anthracis''<br /> | ||
**[[3aal]] - GkENN – ''Geobacillus kaustophilus''<br /> | **[[3aal]] - GkENN – ''Geobacillus kaustophilus''<br /> | ||
| - | **[[3aam]] - TtENN – ''Thermus thermophilus'' | + | **[[3aam]] - TtENN – ''Thermus thermophilus''<br /> |
| + | **[[2x7v]], [[2x7w]] - TmENN - ''Thermotoga maritima'' <br /> | ||
*ENN-V | *ENN-V | ||
| Line 72: | Line 75: | ||
**[[2opf]], [[2oq4]], [[6fbu]] - EcENN (mutant) + DNA | **[[2opf]], [[2oq4]], [[6fbu]] - EcENN (mutant) + DNA | ||
| - | *ENN-VIII-like | + | *ENN-VIII-like or NEIL1 |
| - | **[[6lwa]], [[6lwb]], [[6lwc]], [[6lwd]], [[6lwf]], [[6lwf]], [[6lwg]], [[6lwh]], [[6lwi]], [[6lwj]], [[6lwl]], [[6lwk]], [[6lwm]], [[6lwn]], [[6lwo]], [[6lwp]], [[6lwq]], [[6lwr]] – hENN + DNA<br /> | + | **[[1tdh]], [[4nrv]], [[5itq]] – hENN<br /> |
| + | **[[5itr]], [[5itt]], [[5itu]], [[5itx]], [[5ity]], [[6lwa]], [[6lwb]], [[6lwc]], [[6lwd]], [[6lwf]], [[6lwf]], [[6lwg]], [[6lwh]], [[6lwi]], [[6lwj]], [[6lwl]], [[6lwk]], [[6lwm]], [[6lwn]], [[6lwo]], [[6lwp]], [[6lwq]], [[6lwr]] – hENN + DNA<br /> | ||
*AP ENN | *AP ENN | ||
| Line 83: | Line 87: | ||
*Cas ENN | *Cas ENN | ||
| - | **[[1wj9]], [[4ej3]] – TtCas<br /> | + | **[[1wj9]], [[4ej3], [[6ke1]]] – TtCas<br /> |
**[[4n06]] – AfCas1 - ''Archaeoglobus fulgidus'' <br /> | **[[4n06]] – AfCas1 - ''Archaeoglobus fulgidus'' <br /> | ||
**[[3god]] – PaCas1 – ''Pseudomonas aeruginosa''<br /> | **[[3god]] – PaCas1 – ''Pseudomonas aeruginosa''<br /> | ||
| Line 96: | Line 100: | ||
**[[4p6i]], [[4qdl]] – EcCas1 + EcCas2<br /> | **[[4p6i]], [[4qdl]] – EcCas1 + EcCas2<br /> | ||
**[[6qy3]] – GsCas1 + EcCas2 + Csn2 – Cryo EM<br /> | **[[6qy3]] – GsCas1 + EcCas2 + Csn2 – Cryo EM<br /> | ||
| + | **[[7cr6]], [[7cr8]] – Cas1 + Cas2 + DNA – ''Synechocystis''<br /> | ||
| + | **[[7ei1]] – PfCas1 + Cas2 - ''Pyrococcus furiosus''<br /> | ||
**[[3s4l]] – MjCas3 – ''Methanocaldococcus jannaschii''<br /> | **[[3s4l]] – MjCas3 – ''Methanocaldococcus jannaschii''<br /> | ||
**[[4qqw]] – TfCas3 – ''Thermobifida fusca''<br /> | **[[4qqw]] – TfCas3 – ''Thermobifida fusca''<br /> | ||
| Line 106: | Line 112: | ||
**[[6njy]] – Cas6 - ''Mahella australiensis''<br /> | **[[6njy]] – Cas6 - ''Mahella australiensis''<br /> | ||
**[[4qr0]], [[4qr1]], [[6o56]] - SpCas9 (Csn1) – ''Streptococcus pyogenes''<br /> | **[[4qr0]], [[4qr1]], [[6o56]] - SpCas9 (Csn1) – ''Streptococcus pyogenes''<br /> | ||
| + | **[[7vk9]] - SpCas9 (mutant)<br /> | ||
| + | **[[7mpz]] - GsCas9 HNH nuclease domain<br /> | ||
| + | **[[8f43]] - GsCas9 HNH nuclease domain (mutant)<br /> | ||
**[[4ilr]], [[3zfv]] – SsCas6 <br /> | **[[4ilr]], [[3zfv]] – SsCas6 <br /> | ||
**[[3i4h]] – PfCas6 - ''Pyrococcus furiosus''<br /> | **[[3i4h]] – PfCas6 - ''Pyrococcus furiosus''<br /> | ||
**[[4dzd]] – EcCas6e<br /> | **[[4dzd]] – EcCas6e<br /> | ||
**[[7jzx]] – PaCas6f in crispr-Cas surveillance complex – Cryo EM<br /> | **[[7jzx]] – PaCas6f in crispr-Cas surveillance complex – Cryo EM<br /> | ||
| - | **[[4qr0]], [[4qr1]] - SpCas9 (Csn1) – ''Streptococcus pyogenes''<br /> | ||
**[[4qr0]], [[4qr1]], [[4cmp]], [[4cmq]] - SpCas9 <br /> | **[[4qr0]], [[4qr1]], [[4cmp]], [[4cmq]] - SpCas9 <br /> | ||
**[[4ogc]], [[4oge]] – Cas9 II-C – ''Actinomyces naeslundii''<br /> | **[[4ogc]], [[4oge]] – Cas9 II-C – ''Actinomyces naeslundii''<br /> | ||
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**[[6kdv]] – TtCas1 + DNA <br /> | **[[6kdv]] – TtCas1 + DNA <br /> | ||
**[[6opm]] – Cas1 + DNA – ''Methanosarcina mazei''<br /> | **[[6opm]] – Cas1 + DNA – ''Methanosarcina mazei''<br /> | ||
| + | **[[7mi9]] – GsuCas1 + Cas2 + DNA – ''Geobacter sulfurreducens''<br /> | ||
| + | **[[7mi5]], [[7mid]] – GsuCas1 + Cas2 + Cas4 + DNA <br /> | ||
| + | **[[7mi4]], [[7mib]] – GsuCas1 + Cas2 + Cas4 + DNA – Cryo EM<br /> | ||
| + | **[[8d3l]], [[8d3m]], [[8d3p]], [[8d3q]] – Cas1 + Cas2 + Cas4 + DNA – ''Alkalihalobacillus halodurans'' – Cryo EM<br /> | ||
**[[4ill]], [[4ilm]] – SsCas6 + RNA - ''Sulfolobus solfataricus''<br /> | **[[4ill]], [[4ilm]] – SsCas6 + RNA - ''Sulfolobus solfataricus''<br /> | ||
**[[5uz9]] – PaCsa5f + Cas7f + Cas8f + anti-crispr protein + RNA - Cryo EM<br /> | **[[5uz9]] – PaCsa5f + Cas7f + Cas8f + anti-crispr protein + RNA - Cryo EM<br /> | ||
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**[[6vqx]] – PaCas6f (Csy4) + ACRF6 + Cys1 + Csy2 + Csy3 + RNA – Cryo EM<br /> | **[[6vqx]] – PaCas6f (Csy4) + ACRF6 + Cys1 + Csy2 + Csy3 + RNA – Cryo EM<br /> | ||
**[[4al5]], [[4al6]] - PaCas6f (Csy4) (mutant) + RNA <br /> | **[[4al5]], [[4al6]] - PaCas6f (Csy4) (mutant) + RNA <br /> | ||
| - | **[[4zt0]] - SpCas9 + RNA <br /> | + | **[[4zt0]], [[7ox8]], [[7ox9]] - SpCas9 + RNA <br /> |
**[[4zt9]] - SpCas9 (mutant) + RNA <br /> | **[[4zt9]] - SpCas9 (mutant) + RNA <br /> | ||
| - | **[[5f9r]], [[6k4p]], [[6k4q]], [[6o0x]], [[6o0y]], [[6o0z]] - SpCas9 + RNA + DNA<br /> | + | **[[7qqo]], [[7qqp]], [[7qqq]], [[7qqr]], [[7qqs]], [[7qqt]], [[7qqu]], [[7qqv]], [[7qqw]], [[7qqx]], [[7qqz]], [[7qr0]], [[7qr1]], [[7qr5]], [[7qr7]], [[7qr8]], [[7s4u]], [[7s4v]],[[7z4c]], [[7z4d]], [[7z4e]], [[7z4g], [[7z4h]], [[7z4i]], [[7z4j]],[[7z4k]], [[7z4l]]] - SpCas9 + DNA <br /> |
| - | **[[4oo8]], [[4un3]], [[4un4]], [[4un5]], [[5fw1]], [[5fw2]], [[5fw3]], [[5fq5]], [[5b2r]], [[5b2s]], [[5b2t]], [[5y36]], [[ | + | **[[5f9r]], [[6k4p]], [[6k4q]], [[6o0x]], [[6o0y]], [[6o0z]], [[7ox7]], [[7oxa]], [[7s36]], [[7s37]], [[7s38]], [[7s3h]], [[7s4x]], [[7zo1]] - SpCas9 + RNA + DNA<br /> |
| + | **[[7v59]] - SpCas9 + RNA + DNA – Cryo EM<br /> | ||
| + | **[[4oo8]], [[4un3]], [[4un4]], [[4un5]], [[5fw1]], [[5fw2]], [[5fw3]], [[5fq5]], [[5b2r]], [[5b2s]], [[5b2t]], [[5y36]], [[6ai6]], [[6k3z]], [[6k4s]], [[6k4u]], [[6k57]] - SpCas9 (Csn1) (mutant) + RNA + DNA<br /> | ||
**[[5xbl]] - SpCas9 + associated protein + RNA <br /> | **[[5xbl]] - SpCas9 + associated protein + RNA <br /> | ||
**[[6ifo]] - SpCas9 + AcriiA2 + RNA <br /> | **[[6ifo]] - SpCas9 + AcriiA2 + RNA <br /> | ||
**[[5vw1]] - SpCas9 + AcriiA4 + RNA <br /> | **[[5vw1]] - SpCas9 + AcriiA4 + RNA <br /> | ||
**[[6mcc]], [[5vzl]], [[6mcb]] - SpCas9 + AcriiA4 + RNA – Cryo EM<br /> | **[[6mcc]], [[5vzl]], [[6mcb]] - SpCas9 + AcriiA4 + RNA – Cryo EM<br /> | ||
| + | **[[6vpc]] - SpCas9 + TADA-8E + RNA + DNA<br /> | ||
**[[5vgb]] - NmCas9 + AcriiC1 – ''Neisseria meningitidis'' <br /> | **[[5vgb]] - NmCas9 + AcriiC1 – ''Neisseria meningitidis'' <br /> | ||
**[[6jdx]], [[6jdj]], [[6j9m]] - NmCas9 + AcriiC2 <br /> | **[[6jdx]], [[6jdj]], [[6j9m]] - NmCas9 + AcriiC2 <br /> | ||
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**[[6kc7]] - NmCas9 (mutant) + RNA + DNA<br /> | **[[6kc7]] - NmCas9 (mutant) + RNA + DNA<br /> | ||
**[[6je9]] - NmCas9 + RNA + AcriiC3<br /> | **[[6je9]] - NmCas9 + RNA + AcriiC3<br /> | ||
| + | **[[8hj4]] - NmCas9 + RNA + AcriiC5 – Cryo EM<br /> | ||
**[[6je4]] - NmCas9 + RNA + DNA + AcriiC3<br /> | **[[6je4]] - NmCas9 + RNA + DNA + AcriiC3<br /> | ||
**[[6rj9]], [[6rja]], [[6rjg]] - StCas9 + RNA + DNA + AcriiA6 – ''Streptococcus thermophilus''<br /> | **[[6rj9]], [[6rja]], [[6rjg]] - StCas9 + RNA + DNA + AcriiA6 – ''Streptococcus thermophilus''<br /> | ||
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**[[5czz]] - SaCas9 (Csn1) + RNA + DNA - ''Staphylococcus aureus''<br /> | **[[5czz]] - SaCas9 (Csn1) + RNA + DNA - ''Staphylococcus aureus''<br /> | ||
**[[5axw]] - SaCas9 (Csn1) (mutant) + RNA + DNA <br /> | **[[5axw]] - SaCas9 (Csn1) (mutant) + RNA + DNA <br /> | ||
| + | **[[7enh]], [[7eni]], [[7enr]] - SaCas9 + RNA + ACRIIA <br /> | ||
**[[6joo]] - Cas9 + RNA + DNA – ''Corynebacterium diphtheriae''<br /> | **[[6joo]] - Cas9 + RNA + DNA – ''Corynebacterium diphtheriae''<br /> | ||
**[[5b2o]], [[5b2p]], [[5b2q]] - FtCas9 (mutant) + RNA + DNA – ''Francisella tularensis''<br /> | **[[5b2o]], [[5b2p]], [[5b2q]] - FtCas9 (mutant) + RNA + DNA – ''Francisella tularensis''<br /> | ||
| - | **[[6wc0]] - Cas9 + RNA + DNA – ''Acidothermus cellulolyticus''<br /> | + | **[[6wbr]], [[6wc0]] - Cas9 + RNA + DNA – ''Acidothermus cellulolyticus''<br /> |
**[[6i1l]], [[6i1k]], [[6gtg]], [[6gtf]], [[6gte]], [[6gtd]], [[6gtc]] – FtCas12a (mutant) + RNA + DNA <br /> | **[[6i1l]], [[6i1k]], [[6gtg]], [[6gtf]], [[6gte]], [[6gtd]], [[6gtc]] – FtCas12a (mutant) + RNA + DNA <br /> | ||
**[[6w62]] – Cas12i + RNA – ''Lachnospiraceae bacterium'' – Cryo EM<br /> | **[[6w62]] – Cas12i + RNA – ''Lachnospiraceae bacterium'' – Cryo EM<br /> | ||
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**[[2gw6]] – hENN subunit sen15 – NMR<br /> | **[[2gw6]] – hENN subunit sen15 – NMR<br /> | ||
**[[6z9u]] – hENN subunits sen15+sen34<br /> | **[[6z9u]] – hENN subunits sen15+sen34<br /> | ||
| + | **[[7uxa]] – hENN + tRNA-Arg – Cryo EM<br /> | ||
**[[1a79]], [[1a76]], [[1a77]] - MjENN – ''Methanocaldococcus jannaschii''<br /> | **[[1a79]], [[1a76]], [[1a77]] - MjENN – ''Methanocaldococcus jannaschii''<br /> | ||
**[[2cv8]] - ENN – ''Sulfolobus tokodaii''<br /> | **[[2cv8]] - ENN – ''Sulfolobus tokodaii''<br /> | ||
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**[[2ohc]], [[2ohe]] - TaENN – ''Thermoplasma acidophilum''<br /> | **[[2ohc]], [[2ohe]] - TaENN – ''Thermoplasma acidophilum''<br /> | ||
**[[2zyz]] – ENN – ''Pyrobaculum aerophilum''<br /> | **[[2zyz]] – ENN – ''Pyrobaculum aerophilum''<br /> | ||
| - | **[[ | + | **[[3if0]] - ENN + NEQ261 – ''Nanoarchaeum equitans''<br /> |
**[[3ajv]] - ApENN (mutant) – ''Aeropyrum pernix''<br /> | **[[3ajv]] - ApENN (mutant) – ''Aeropyrum pernix''<br /> | ||
**[[3p1y]] - ApENN /AfENN<br /> | **[[3p1y]] - ApENN /AfENN<br /> | ||
| Line 283: | Line 301: | ||
*Sm ENN | *Sm ENN | ||
| - | **[[1smn]], [[1qae]], [[1ql0]], [[1g8t]] – ENN – ''Serratia marcescens'' | + | **[[1smn]], [[1qae]], [[1ql0]], [[1g8t]], [[4e3y]] – ENN – ''Serratia marcescens'' |
*NaeI ENN | *NaeI ENN | ||
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*HinDIII ENN | *HinDIII ENN | ||
| - | **[[2e52]], [[3a4k]] - HiENN + DNA | + | **[[2e52]], [[3a4k]], [[3wvg]], [[3wvh]], [[3wvi]], [[3wvk]], [[3wvp]] - HiENN + DNA |
*HinP1I ENN | *HinP1I ENN | ||
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**[[1ul1]] - hENN + PCNA <br /> | **[[1ul1]] - hENN + PCNA <br /> | ||
**[[6tnz]] - hENN in processive polymerase – Cryo EM <br /> | **[[6tnz]] - hENN in processive polymerase – Cryo EM <br /> | ||
| + | **[[7qo1]] - hENN + DNA ligase + PCNA + DNA – Cryo EM <br /> | ||
**[[1mc8]] - PhENN (mutant) <br /> | **[[1mc8]] - PhENN (mutant) <br /> | ||
**[[3ory]]– ENN – ''Desulfurococcus amylolyticus''<br /> | **[[3ory]]– ENN – ''Desulfurococcus amylolyticus''<br /> | ||
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**[[1rxz]] - AfENN + PCNA <br /> | **[[1rxz]] - AfENN + PCNA <br /> | ||
**[[4wa8]] – ENN – ''Methanopyrus kandleri''<br /> | **[[4wa8]] – ENN – ''Methanopyrus kandleri''<br /> | ||
| + | **[[6c33]] - MsENN – ''Mycobacterium smegmatis''<br /> | ||
| + | **[[6c34]], [[6c35]], [[6c36]] - MsENN (mutant) <br /> | ||
| - | *DNA mismatch ENN | + | *DNA mismatch ENN or Pms2 |
| - | **[[1h7u]] – hENN<br /> | + | **[[1h7u]], [[7rck]] – hENN + ATP<br /> |
| - | **[[6mfq]] – hENN Pms2<br /> | + | **[[7rci]] - hENN (mutant) + ATP<br /> |
| + | **[[6mfq]], [[7rcb]] – hENN Pms2<br /> | ||
**[[5u5r]] – hENN + importin<br /> | **[[5u5r]] – hENN + importin<br /> | ||
**[[1odg]] - EcENN + DNA<br /> | **[[1odg]] - EcENN + DNA<br /> | ||
| + | **[[5x9y]] – ENN MutL – ''Aquifex aeolicus''<br /> | ||
*Vvn ENN | *Vvn ENN | ||
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**[[1ouo]] – VvENN – ''Vibrio vulnificus''<br /> | **[[1ouo]] – VvENN – ''Vibrio vulnificus''<br /> | ||
**[[1oup]], [[2ivk]] - VvENN + DNA | **[[1oup]], [[2ivk]] - VvENN + DNA | ||
| + | |||
| + | *Splicing ENN | ||
| + | |||
| + | **[[1r0v]], [[1r11]], [[1rlv]] – AfENN | ||
*Structure-specific ENN | *Structure-specific ENN | ||
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*BfiI ENN | *BfiI ENN | ||
| - | **[[2c1l]] – | + | **[[2c1l]] – BfENN – ''Bacillus firmus''<br /> |
| + | **[[3zi5]] – BfENN + DNA<br /> | ||
*SfiI ENN | *SfiI ENN | ||
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**[[2ziv]] – hENN EME1 (mutant) + Mus81<br /> | **[[2ziv]] – hENN EME1 (mutant) + Mus81<br /> | ||
**[[6vwb]] – hENN Mus81 N-terminal - NMR<br /> | **[[6vwb]] – hENN Mus81 N-terminal - NMR<br /> | ||
| + | **[[2mc3]] – hENN Mus81 winged-helix domain - NMR<br /> | ||
**[[4p0p]], [[4p0q]], [[4p0r]], [[4p0s]] – hENN EME1 + Mus81 + DNA<br /> | **[[4p0p]], [[4p0q]], [[4p0r]], [[4p0s]] – hENN EME1 + Mus81 + DNA<br /> | ||
**[[2kpf]] - mENN – mouse<br /> | **[[2kpf]] - mENN – mouse<br /> | ||
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**[[4och]], [[4od6]] - DrENN SMR domain<br /> | **[[4och]], [[4od6]] - DrENN SMR domain<br /> | ||
| + | **[[7vuf]] - TtENN core<br /> | ||
| + | **[[7vuk]] - TtENN core + ADP<br /> | ||
*Endoms ENN | *Endoms ENN | ||
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**[[6uke]], [[6ukf]], [[6ukg]], [[6ukh]], [[6uki]] – ENN + DNA – ''Haemophilus parahaemolyticus'' <br /> | **[[6uke]], [[6ukf]], [[6ukg]], [[6ukh]], [[6uki]] – ENN + DNA – ''Haemophilus parahaemolyticus'' <br /> | ||
| + | |||
| + | *Cap-snatching ENN see [[RNA polymerase]] | ||
*'''Intron-encoded endonuclease''' | *'''Intron-encoded endonuclease''' | ||
Revision as of 09:46, 16 February 2023
3D structures of endonuclease
Updated on 16-February-2023 {{#tree:id=OrganizedByTopic|openlevels=0|
- ENN-I
- ENN-II
- ENN-III
- ENN-IV
- ENN-V
- 4nsp – hENN catalytic domain
- 6oze – hENN (mutant)
- 5aoy – mENN (mutant)
- 6ozj, 6ozk, 6ozl, 6ozm, 6ozn, 6ozo, 6ozr – mENN + DNA
- 6ozq – mENN (mutant) + DNA
- 6ozp, 6ozs – mENN + DNA + RNA
- 1eni, 1enj, 1enk, 2end - T4ENN
- 1vas, 2fcc - T4ENN + DNA
- 3hd0 - TmENN - Thermotoga maritima
- 2w35, 2w36, 4b20 - TmENN + DNA
- 6ozf, 6ozg - TmENN (mutant) + DNA
- 3ga2 - BsENN (mutant) – Bacillus subtilis
- 3goc - ENN – Streptomyces avermitilis
- 4xpu – EcENN
- 6ozh - CiENN + DNA – Ciona intestinalis
- 6ozi – CiENN (mutant) + DNA
- 4nsp – hENN catalytic domain
- ENN-VII
- ENN-VIII
- ENN-VIII-like or NEIL1
- AP ENN
- Cas ENN
- 1wj9, [[4ej3], 6ke1] – TtCas
- 4n06 – AfCas1 - Archaeoglobus fulgidus
- 3god – PaCas1 – Pseudomonas aeruginosa
- 3nkd – EcCas1
- 4wj0 – PhCas1 - Pyrococcus horikoshii
- 4xtk – TmCas1
- 5fcl – Cas1 - Pectobacterium atrosepticum
- 4zkj - SpCas1 – Streptococcus pyogenes
- 3oq2 – Cas2 – Desulfovibrio vulgaris
- 4mak – EcCas2
- 6jhz – EcCas2 + peptide
- 4p6i, 4qdl – EcCas1 + EcCas2
- 6qy3 – GsCas1 + EcCas2 + Csn2 – Cryo EM
- 7cr6, 7cr8 – Cas1 + Cas2 + DNA – Synechocystis
- 7ei1 – PfCas1 + Cas2 - Pyrococcus furiosus
- 3s4l – MjCas3 – Methanocaldococcus jannaschii
- 4qqw – TfCas3 – Thermobifida fusca
- 4qqx – TfCas3 + ATP
- 4qqy – TfCas3 + ADP
- 4qqz – TfCas3 + AMPPNP
- 4q2c - TteCas3 – Thermobaclum terrenum
- 4q2d - TteCas3 + ATP
- 3i4h – Cas4 - Pyrobaculum calidifontis
- 6njy – Cas6 - Mahella australiensis
- 4qr0, 4qr1, 6o56 - SpCas9 (Csn1) – Streptococcus pyogenes
- 7vk9 - SpCas9 (mutant)
- 7mpz - GsCas9 HNH nuclease domain
- 8f43 - GsCas9 HNH nuclease domain (mutant)
- 4ilr, 3zfv – SsCas6
- 3i4h – PfCas6 - Pyrococcus furiosus
- 4dzd – EcCas6e
- 7jzx – PaCas6f in crispr-Cas surveillance complex – Cryo EM
- 4qr0, 4qr1, 4cmp, 4cmq - SpCas9
- 4ogc, 4oge – Cas9 II-C – Actinomyces naeslundii
- 3ung, 3ur3, 4doz, 4w8y – PfCas10 CMR2 subunit
- 4h4k – PfCas10 CMR2+CMR3 subunits
- 3w2v – PfCas10 CMR2+CMR3 subunits + AMP
- 3w2w – PfCas10 CMR2+CMR3 subunits + ATP
- 4gkf – PfCas10 CMR5 subunit
- 6w62 – Cas12i + RNA – Lachnospiraceae bacterium – Cryo EM
- 4an8, 4f3e – TtCasA (Cse1)
- 4h3t - CasA (Cse1) – Acidimicrobium ferrooxidans
- 4h79 - TfCasB (Cse2)
- 3wa8 - CasB (Cse2) – Meiothermus ruber
- 4h7a - TtCasB (Cse2)
- 4tvx – EcCasA (Cse1) + CasE
- 3qhq - Csn2 – Streptococcus agalactiae
- 3toc, 3v7f – SpCsn2
- 3ps0 – SsCsa2
- 1wj9, [[4ej3], 6ke1] – TtCas
- Cas ENN complex with RNA and DNA
- 5dlj, 5dqt, 5dqu, 5dqz, 5ds4, 5ds5, 5ds6, 5vvl, 5vvk, 5vvj – EcCas1 + EcCas2 + DNA
- 5wfe – EcCas1 + EcCas2 + IHF-a + IHF-b + DNA
- 5xvp, 5xvo, 5xvn – Cas1 + Cas2 + DNA – Enterococcus faecalis
- 7cr6, 7cr8 – Cas1 + Cas2 + DNA – Synechocystis
- 6qxt, 6qxf – GsCas1 (mutant) + EcCas2 + Csn2 + DNA – Cryo EM
- 6kdv – TtCas1 + DNA
- 6opm – Cas1 + DNA – Methanosarcina mazei
- 7mi9 – GsuCas1 + Cas2 + DNA – Geobacter sulfurreducens
- 7mi5, 7mid – GsuCas1 + Cas2 + Cas4 + DNA
- 7mi4, 7mib – GsuCas1 + Cas2 + Cas4 + DNA – Cryo EM
- 8d3l, 8d3m, 8d3p, 8d3q – Cas1 + Cas2 + Cas4 + DNA – Alkalihalobacillus halodurans – Cryo EM
- 4ill, 4ilm – SsCas6 + RNA - Sulfolobus solfataricus
- 5uz9 – PaCsa5f + Cas7f + Cas8f + anti-crispr protein + RNA - Cryo EM
- 6b48, 6b47, 6b46, 6b45 – PaCsa6 + Csy1 + Csy2 + Csy3 + anti-crispr protein + RNA - Cryo EM
- 6b44 – PaCsa6 + Csy1 + Csy2 + Csy3 + anti-crispr protein + DNA - Cryo EM
- 6ne0 – PaCsa6/Csy4 + Csy1 + Csy2 + Csy3 + DNA + RNA – Cryo EM
- 3pkm – PfCas6 + RNA
- 2y8w, 2y8y, 3qrp, 3qrq, 2qrr – TtCas6e (Cse3) + RNA
- 2xli, 2xlj, 2xlk, 4al7 – PaCas6f (Csy4) + RNA
- 6vqv, 6w1x – PaCas6f (Csy4) + ACRF9 + Cys1 + Csy2 + Csy3 + RNA – Cryo EM
- 6whi – PaCas6f (Csy4) + ACRF9 + Cys1 + Csy2 + Csy3 + RNA + DNA – Cryo EM
- 6vqw – PaCas6f (Csy4) + ACRF8 + Cys1 + Csy2 + Csy3 + RNA – Cryo EM
- 6vqx – PaCas6f (Csy4) + ACRF6 + Cys1 + Csy2 + Csy3 + RNA – Cryo EM
- 4al5, 4al6 - PaCas6f (Csy4) (mutant) + RNA
- 4zt0, 7ox8, 7ox9 - SpCas9 + RNA
- 4zt9 - SpCas9 (mutant) + RNA
- 7qqo, 7qqp, 7qqq, 7qqr, 7qqs, 7qqt, 7qqu, 7qqv, 7qqw, 7qqx, 7qqz, 7qr0, 7qr1, 7qr5, 7qr7, 7qr8, 7s4u, 7s4v,7z4c, 7z4d, 7z4e, [[7z4g], 7z4h, 7z4i, 7z4j,7z4k, 7z4l] - SpCas9 + DNA
- 5f9r, 6k4p, 6k4q, 6o0x, 6o0y, 6o0z, 7ox7, 7oxa, 7s36, 7s37, 7s38, 7s3h, 7s4x, 7zo1 - SpCas9 + RNA + DNA
- 7v59 - SpCas9 + RNA + DNA – Cryo EM
- 4oo8, 4un3, 4un4, 4un5, 5fw1, 5fw2, 5fw3, 5fq5, 5b2r, 5b2s, 5b2t, 5y36, 6ai6, 6k3z, 6k4s, 6k4u, 6k57 - SpCas9 (Csn1) (mutant) + RNA + DNA
- 5xbl - SpCas9 + associated protein + RNA
- 6ifo - SpCas9 + AcriiA2 + RNA
- 5vw1 - SpCas9 + AcriiA4 + RNA
- 6mcc, 5vzl, 6mcb - SpCas9 + AcriiA4 + RNA – Cryo EM
- 6vpc - SpCas9 + TADA-8E + RNA + DNA
- 5vgb - NmCas9 + AcriiC1 – Neisseria meningitidis
- 6jdx, 6jdj, 6j9m - NmCas9 + AcriiC2
- 6j9n - NmCas9 + AcriiC3
- 6jdq - NmCas9 + RNA
- 6jdv, 6je3, 6jfu, 6kc8 - NmCas9 + RNA + DNA
- 6kc7 - NmCas9 (mutant) + RNA + DNA
- 6je9 - NmCas9 + RNA + AcriiC3
- 8hj4 - NmCas9 + RNA + AcriiC5 – Cryo EM
- 6je4 - NmCas9 + RNA + DNA + AcriiC3
- 6rj9, 6rja, 6rjg - StCas9 + RNA + DNA + AcriiA6 – Streptococcus thermophilus
- 6rjd, 6m0v, 6m0w, 6m0x - StCas9 + RNA + DNA
- 5x2h, 5x2g – Cas9 + RNA + DNA – Campylobacter jejuni
- 5czz - SaCas9 (Csn1) + RNA + DNA - Staphylococcus aureus
- 5axw - SaCas9 (Csn1) (mutant) + RNA + DNA
- 7enh, 7eni, 7enr - SaCas9 + RNA + ACRIIA
- 6joo - Cas9 + RNA + DNA – Corynebacterium diphtheriae
- 5b2o, 5b2p, 5b2q - FtCas9 (mutant) + RNA + DNA – Francisella tularensis
- 6wbr, 6wc0 - Cas9 + RNA + DNA – Acidothermus cellulolyticus
- 6i1l, 6i1k, 6gtg, 6gtf, 6gte, 6gtd, 6gtc – FtCas12a (mutant) + RNA + DNA
- 6w62 – Cas12i + RNA – Lachnospiraceae bacterium – Cryo EM
- 4u7u – EcCasA (Cse1) + CasB + CasC + CasD + CasE + RNA
- 4qyz, 5h9f, 5h9e – EcCasA (Cse1) + CasB + CasC + CasD + CasE + RNA + DNA
- 5wqe – AaCas C2C1 + RNA – Alicyclobacillus acidoterrestris
- 5u34 – AaCas C2C1 (mutant) + RNA
- 5u30, 5u31, 5u33 – AaCas C2C1 + RNA + DNA
- 5kk5, 5b43 – AcCas Cpf1 + RNA + DNA – Acidaminococcus
- 5xh7, 5xh6 – AcCas Cpf1 (mutant) + RNA + DNA
- 5ng6 – FtCas Cpf1 + RNA
- 5nfv, 5mga – FtCas Cpf1 + RNA + DNA
- 5dlj, 5dqt, 5dqu, 5dqz, 5ds4, 5ds5, 5ds6, 5vvl, 5vvk, 5vvj – EcCas1 + EcCas2 + DNA
- EcoKI ENN
- 2ar0 – EcENN (mutant)
- 2ar0 – EcENN (mutant)
- Ecoo109I ENN
- EcoRI ENN
- EcoRII ENN
- EcoRV ENN
- BamHI ENN
- Bax1 ENN
- Bbvci ENN
- FokI ENN
- LAGLIDAD ENN
- PvuII ENN
- tRNA-splicing ENN
- 2gw6 – hENN subunit sen15 – NMR
- 6z9u – hENN subunits sen15+sen34
- 7uxa – hENN + tRNA-Arg – Cryo EM
- 1a79, 1a76, 1a77 - MjENN – Methanocaldococcus jannaschii
- 2cv8 - ENN – Sulfolobus tokodaii
- 2gjw - AfENN + RNA – Archaeoglobus fulgidus
- 1r0v, 1r11 – AfENN
- 2ohc, 2ohe - TaENN – Thermoplasma acidophilum
- 2zyz – ENN – Pyrobaculum aerophilum
- 3if0 - ENN + NEQ261 – Nanoarchaeum equitans
- 3ajv - ApENN (mutant) – Aeropyrum pernix
- 3p1y - ApENN /AfENN
- 3p1z - ApENN + protein
- 2gw6 – hENN subunit sen15 – NMR
- VSR ENN
- BglI ENN
- BglII ENN
- 1es8 - BsENN
- MunI ENN
- 1d02 - ENN (mutant) + DNA - Mycoplasma
- Sm ENN
- NaeI ENN
- NgoMIV ENN
- NEI ENN
- 1tdh - hENN
- BsoBI ENN
- 1dc1 - GsENN + DNA
- Bse634I ENN
- HincII ENN
- HinDIII ENN
- HinP1I ENN
- Flap ENN
- 5zod - hENN
- 3q8k, 3q8l, 3q8m - hENN + DNA
- 5zog, 5zof, 5zoe - hENN (mutant) + DNA
- 5fv7 - hENN + inhibitor
- 1ul1 - hENN + PCNA
- 6tnz - hENN in processive polymerase – Cryo EM
- 7qo1 - hENN + DNA ligase + PCNA + DNA – Cryo EM
- 1mc8 - PhENN (mutant)
- 3ory– ENN – Desulfurococcus amylolyticus
- 1rxv, 1rxw - AfENN + DNA
- 2izo - SsENN + PCNA – Sulfolobus solfataricus
- 1a76, 1a77 - MjENN
- 1b43 – PfENN – Pyrococcus furiosus
- 1rxz - AfENN + PCNA
- 4wa8 – ENN – Methanopyrus kandleri
- 6c33 - MsENN – Mycobacterium smegmatis
- 6c34, 6c35, 6c36 - MsENN (mutant)
- 5zod - hENN
- DNA mismatch ENN or Pms2
- Vvn ENN
- Splicing ENN
- Structure-specific ENN
- 4zou – hENN SLX4 subunit BTB domain
- 4uyi – hENN SLX4 subunit BTB domain (mutant)
- 7cq4 – yENN SLX1 (mutant)+SLX4 subunits + DNA
- 4xm5 – CgENN SLX1 subunit – Candida glabrata
- 4xlg – CgENN SLX1 (mutant)+SLX4 subunits
- 4zdt – fyENN SLX1+SLX4 subunits
- 6seh – ThtENN SLX1 (mutant)+SLX4 subunits – Thielavia terrestris
- 6sei – ThtENN SLX1 (mutant)+SLX4 subunits + DNA
- 4zou – hENN SLX4 subunit BTB domain
- BfiI ENN
- SfiI ENN
- Ecl18kI ENN
- SdaI ENN
- 2ixs – ENN – Streptomyces diastaticus
- PabI ENN
- 2dvy – ENN – Pyrococcus abyssi
- PspGI ENN
- 3bm3 – ENN – Pyrococcus
- HNH ENN
- UV damage ENN
- NotI ENN
- BpujI ENN
- Sau3AI ENN
- HpyI ENN
- PacI ENN
- Crossover junction ENN
- OkrAI ENN
- 3odh - ENN + DNA – Oceanobacter kriegii
- BspD6I ENN
- 2ewf - ENN – Bacillus
- ThaI ENN
- 3ndh - TaENN + DNA
- Xpf ENN
- Mazf3 ENN
- Vapc ENN
- Muts2 ENN
- Endoms ENN
- ENN G
- ENN Q
- ENN S
- 5ybb – ENN + R-M system + DNA – Caldanaerobacter subterraneus
- 5ybb – ENN + R-M system + DNA – Caldanaerobacter subterraneus
- Apurinic-apyrimidinic ENN or APE
- 5cfg, 6mk3, 6mkk, 6mkm, 6mko – hAPE1
- 5dff, 5dfh, 5dfi, 5dfj, 5dg0, 5wn5, 5wn4, 5wn3, 5wn2, 5wn1, 5wn0, 6bos, 6w3l, 6w3n, 6w3q, 6w3u – hAPE1 + DNA
- 6bot, 6boq, 6bor, 6bou, 6bov, 6bow, 6p93, 6p94, 6w0q, 6w43, 6w4i, 6w4t – hAPE1 (mutant) + DNA
- 7cd5, 7cd6 – mAPE1 + DNA
- 6wcd – fAPE2 catalytic domain - frog
- 5cfg, 6mk3, 6mkk, 6mkm, 6mko – hAPE1
- Restriction ENN Pfoi
- Restriction ENN Hhai
- Cap-snatching ENN see RNA polymerase
- Intron-encoded endonuclease
- I-PpoI ENN
- I-CreI ENN
- I-CeuI ENN
- 2ex5 - ENN (mutant) + DNA – Chlamydomonas eugametos
- I-DmoI ENN
- I-AniI ENN
- I-HmuI ENN
- 1u3e - ENN + DNA – Bacillus phage spo1
- I-TevI ENN
- I-SceI ENN
- I-PkoII ENN
- I-MspI ENN
- I-PfuI ENN
- 1dq3 – PfENN
- I-Tsp061I ENN
- 2dch – ENN – Thermoproteus
- I-Vdi141I ENN
- 3e54 – ENN – Vulcanisaeta distribute
- I-MtuI ENN
- I-MsoI ENN
- I-GzeMII ENN
- 4efj – ENN + DNA – Gibberella zeae
- I-tRNA ENN
- 4fz2 – ENN – Candidatus micrarchaeum
- 4fz2 – ENN – Candidatus micrarchaeum
- I-Cvui ENN
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