Endonuclease 3D structures

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Line 25: Line 25:
**[[2abk]], [[1ako]] - EcENN – ''Escherichia coli''<br />
**[[2abk]], [[1ako]] - EcENN – ''Escherichia coli''<br />
**[[1orn]], [[1orp]], [[1p59]] - GsENN + DNA – ''Geobacillus stearothermophilus''<br />
**[[1orn]], [[1orp]], [[1p59]] - GsENN + DNA – ''Geobacillus stearothermophilus''<br />
-
**[[4unf]] – DrENN-1 – ''Deinococcus radiodurans'' <br />
+
**[[4l0k]], [[4unf]] – DrENN-1 – ''Deinococcus radiodurans'' <br />
 +
**[[8a5c]], [[8a5f]] – DrENN-1 (mutant)<br />
**[[4uob]] – DrENN-3 <br />
**[[4uob]] – DrENN-3 <br />
 +
**[[8a5g]] – DrENN-3 (mutant)<br />
*ENN-IV
*ENN-IV
Line 36: Line 38:
**[[1xp3]] - ENN – ''Bacillus anthracis''<br />
**[[1xp3]] - ENN – ''Bacillus anthracis''<br />
**[[3aal]] - GkENN – ''Geobacillus kaustophilus''<br />
**[[3aal]] - GkENN – ''Geobacillus kaustophilus''<br />
-
**[[3aam]] - TtENN – ''Thermus thermophilus''
+
**[[3aam]] - TtENN – ''Thermus thermophilus''<br />
 +
**[[2x7v]], [[2x7w]] - TmENN - ''Thermotoga maritima'' <br />
*ENN-V
*ENN-V
Line 72: Line 75:
**[[2opf]], [[2oq4]], [[6fbu]] - EcENN (mutant) + DNA
**[[2opf]], [[2oq4]], [[6fbu]] - EcENN (mutant) + DNA
-
*ENN-VIII-like
+
*ENN-VIII-like or NEIL1
-
**[[6lwa]], [[6lwb]], [[6lwc]], [[6lwd]], [[6lwf]], [[6lwf]], [[6lwg]], [[6lwh]], [[6lwi]], [[6lwj]], [[6lwl]], [[6lwk]], [[6lwm]], [[6lwn]], [[6lwo]], [[6lwp]], [[6lwq]], [[6lwr]] – hENN + DNA<br />
+
**[[1tdh]], [[4nrv]], [[5itq]] – hENN<br />
 +
**[[5itr]], [[5itt]], [[5itu]], [[5itx]], [[5ity]], [[6lwa]], [[6lwb]], [[6lwc]], [[6lwd]], [[6lwf]], [[6lwf]], [[6lwg]], [[6lwh]], [[6lwi]], [[6lwj]], [[6lwl]], [[6lwk]], [[6lwm]], [[6lwn]], [[6lwo]], [[6lwp]], [[6lwq]], [[6lwr]] – hENN + DNA<br />
*AP ENN
*AP ENN
Line 83: Line 87:
*Cas ENN
*Cas ENN
-
**[[1wj9]], [[4ej3]] – TtCas<br />
+
**[[1wj9]], [[4ej3], [[6ke1]]] – TtCas<br />
**[[4n06]] – AfCas1 - ''Archaeoglobus fulgidus'' <br />
**[[4n06]] – AfCas1 - ''Archaeoglobus fulgidus'' <br />
**[[3god]] – PaCas1 – ''Pseudomonas aeruginosa''<br />
**[[3god]] – PaCas1 – ''Pseudomonas aeruginosa''<br />
Line 96: Line 100:
**[[4p6i]], [[4qdl]] – EcCas1 + EcCas2<br />
**[[4p6i]], [[4qdl]] – EcCas1 + EcCas2<br />
**[[6qy3]] – GsCas1 + EcCas2 + Csn2 – Cryo EM<br />
**[[6qy3]] – GsCas1 + EcCas2 + Csn2 – Cryo EM<br />
 +
**[[7cr6]], [[7cr8]] – Cas1 + Cas2 + DNA – ''Synechocystis''<br />
 +
**[[7ei1]] – PfCas1 + Cas2 - ''Pyrococcus furiosus''<br />
**[[3s4l]] – MjCas3 – ''Methanocaldococcus jannaschii''<br />
**[[3s4l]] – MjCas3 – ''Methanocaldococcus jannaschii''<br />
**[[4qqw]] – TfCas3 – ''Thermobifida fusca''<br />
**[[4qqw]] – TfCas3 – ''Thermobifida fusca''<br />
Line 106: Line 112:
**[[6njy]] – Cas6 - ''Mahella australiensis''<br />
**[[6njy]] – Cas6 - ''Mahella australiensis''<br />
**[[4qr0]], [[4qr1]], [[6o56]] - SpCas9 (Csn1) – ''Streptococcus pyogenes''<br />
**[[4qr0]], [[4qr1]], [[6o56]] - SpCas9 (Csn1) – ''Streptococcus pyogenes''<br />
 +
**[[7vk9]] - SpCas9 (mutant)<br />
 +
**[[7mpz]] - GsCas9 HNH nuclease domain<br />
 +
**[[8f43]] - GsCas9 HNH nuclease domain (mutant)<br />
**[[4ilr]], [[3zfv]] – SsCas6 <br />
**[[4ilr]], [[3zfv]] – SsCas6 <br />
**[[3i4h]] – PfCas6 - ''Pyrococcus furiosus''<br />
**[[3i4h]] – PfCas6 - ''Pyrococcus furiosus''<br />
**[[4dzd]] – EcCas6e<br />
**[[4dzd]] – EcCas6e<br />
**[[7jzx]] – PaCas6f in crispr-Cas surveillance complex – Cryo EM<br />
**[[7jzx]] – PaCas6f in crispr-Cas surveillance complex – Cryo EM<br />
-
**[[4qr0]], [[4qr1]] - SpCas9 (Csn1) – ''Streptococcus pyogenes''<br />
 
**[[4qr0]], [[4qr1]], [[4cmp]], [[4cmq]] - SpCas9 <br />
**[[4qr0]], [[4qr1]], [[4cmp]], [[4cmq]] - SpCas9 <br />
**[[4ogc]], [[4oge]] – Cas9 II-C – ''Actinomyces naeslundii''<br />
**[[4ogc]], [[4oge]] – Cas9 II-C – ''Actinomyces naeslundii''<br />
Line 138: Line 146:
**[[6kdv]] – TtCas1 + DNA <br />
**[[6kdv]] – TtCas1 + DNA <br />
**[[6opm]] – Cas1 + DNA – ''Methanosarcina mazei''<br />
**[[6opm]] – Cas1 + DNA – ''Methanosarcina mazei''<br />
 +
**[[7mi9]] – GsuCas1 + Cas2 + DNA – ''Geobacter sulfurreducens''<br />
 +
**[[7mi5]], [[7mid]] – GsuCas1 + Cas2 + Cas4 + DNA <br />
 +
**[[7mi4]], [[7mib]] – GsuCas1 + Cas2 + Cas4 + DNA – Cryo EM<br />
 +
**[[8d3l]], [[8d3m]], [[8d3p]], [[8d3q]] – Cas1 + Cas2 + Cas4 + DNA – ''Alkalihalobacillus halodurans'' – Cryo EM<br />
**[[4ill]], [[4ilm]] – SsCas6 + RNA - ''Sulfolobus solfataricus''<br />
**[[4ill]], [[4ilm]] – SsCas6 + RNA - ''Sulfolobus solfataricus''<br />
**[[5uz9]] – PaCsa5f + Cas7f + Cas8f + anti-crispr protein + RNA - Cryo EM<br />
**[[5uz9]] – PaCsa5f + Cas7f + Cas8f + anti-crispr protein + RNA - Cryo EM<br />
Line 151: Line 163:
**[[6vqx]] – PaCas6f (Csy4) + ACRF6 + Cys1 + Csy2 + Csy3 + RNA – Cryo EM<br />
**[[6vqx]] – PaCas6f (Csy4) + ACRF6 + Cys1 + Csy2 + Csy3 + RNA – Cryo EM<br />
**[[4al5]], [[4al6]] - PaCas6f (Csy4) (mutant) + RNA <br />
**[[4al5]], [[4al6]] - PaCas6f (Csy4) (mutant) + RNA <br />
-
**[[4zt0]] - SpCas9 + RNA <br />
+
**[[4zt0]], [[7ox8]], [[7ox9]] - SpCas9 + RNA <br />
**[[4zt9]] - SpCas9 (mutant) + RNA <br />
**[[4zt9]] - SpCas9 (mutant) + RNA <br />
-
**[[5f9r]], [[6k4p]], [[6k4q]], [[6o0x]], [[6o0y]], [[6o0z]] - SpCas9 + RNA + DNA<br />
+
**[[7qqo]], [[7qqp]], [[7qqq]], [[7qqr]], [[7qqs]], [[7qqt]], [[7qqu]], [[7qqv]], [[7qqw]], [[7qqx]], [[7qqz]], [[7qr0]], [[7qr1]], [[7qr5]], [[7qr7]], [[7qr8]], [[7s4u]], [[7s4v]],[[7z4c]], [[7z4d]], [[7z4e]], [[7z4g], [[7z4h]], [[7z4i]], [[7z4j]],[[7z4k]], [[7z4l]]] - SpCas9 + DNA <br />
-
**[[4oo8]], [[4un3]], [[4un4]], [[4un5]], [[5fw1]], [[5fw2]], [[5fw3]], [[5fq5]], [[5b2r]], [[5b2s]], [[5b2t]], [[5y36]], [[6ia6]], [[6k3z]], [[6k4s]], [[6k4u]], [[6k57]] - SpCas9 (Csn1) (mutant) + RNA + DNA<br />
+
**[[5f9r]], [[6k4p]], [[6k4q]], [[6o0x]], [[6o0y]], [[6o0z]], [[7ox7]], [[7oxa]], [[7s36]], [[7s37]], [[7s38]], [[7s3h]], [[7s4x]], [[7zo1]] - SpCas9 + RNA + DNA<br />
 +
**[[7v59]] - SpCas9 + RNA + DNA – Cryo EM<br />
 +
**[[4oo8]], [[4un3]], [[4un4]], [[4un5]], [[5fw1]], [[5fw2]], [[5fw3]], [[5fq5]], [[5b2r]], [[5b2s]], [[5b2t]], [[5y36]], [[6ai6]], [[6k3z]], [[6k4s]], [[6k4u]], [[6k57]] - SpCas9 (Csn1) (mutant) + RNA + DNA<br />
**[[5xbl]] - SpCas9 + associated protein + RNA <br />
**[[5xbl]] - SpCas9 + associated protein + RNA <br />
**[[6ifo]] - SpCas9 + AcriiA2 + RNA <br />
**[[6ifo]] - SpCas9 + AcriiA2 + RNA <br />
**[[5vw1]] - SpCas9 + AcriiA4 + RNA <br />
**[[5vw1]] - SpCas9 + AcriiA4 + RNA <br />
**[[6mcc]], [[5vzl]], [[6mcb]] - SpCas9 + AcriiA4 + RNA – Cryo EM<br />
**[[6mcc]], [[5vzl]], [[6mcb]] - SpCas9 + AcriiA4 + RNA – Cryo EM<br />
 +
**[[6vpc]] - SpCas9 + TADA-8E + RNA + DNA<br />
**[[5vgb]] - NmCas9 + AcriiC1 – ''Neisseria meningitidis'' <br />
**[[5vgb]] - NmCas9 + AcriiC1 – ''Neisseria meningitidis'' <br />
**[[6jdx]], [[6jdj]], [[6j9m]] - NmCas9 + AcriiC2 <br />
**[[6jdx]], [[6jdj]], [[6j9m]] - NmCas9 + AcriiC2 <br />
Line 166: Line 181:
**[[6kc7]] - NmCas9 (mutant) + RNA + DNA<br />
**[[6kc7]] - NmCas9 (mutant) + RNA + DNA<br />
**[[6je9]] - NmCas9 + RNA + AcriiC3<br />
**[[6je9]] - NmCas9 + RNA + AcriiC3<br />
 +
**[[8hj4]] - NmCas9 + RNA + AcriiC5 – Cryo EM<br />
**[[6je4]] - NmCas9 + RNA + DNA + AcriiC3<br />
**[[6je4]] - NmCas9 + RNA + DNA + AcriiC3<br />
**[[6rj9]], [[6rja]], [[6rjg]] - StCas9 + RNA + DNA + AcriiA6 – ''Streptococcus thermophilus''<br />
**[[6rj9]], [[6rja]], [[6rjg]] - StCas9 + RNA + DNA + AcriiA6 – ''Streptococcus thermophilus''<br />
Line 172: Line 188:
**[[5czz]] - SaCas9 (Csn1) + RNA + DNA - ''Staphylococcus aureus''<br />
**[[5czz]] - SaCas9 (Csn1) + RNA + DNA - ''Staphylococcus aureus''<br />
**[[5axw]] - SaCas9 (Csn1) (mutant) + RNA + DNA <br />
**[[5axw]] - SaCas9 (Csn1) (mutant) + RNA + DNA <br />
 +
**[[7enh]], [[7eni]], [[7enr]] - SaCas9 + RNA + ACRIIA <br />
**[[6joo]] - Cas9 + RNA + DNA – ''Corynebacterium diphtheriae''<br />
**[[6joo]] - Cas9 + RNA + DNA – ''Corynebacterium diphtheriae''<br />
**[[5b2o]], [[5b2p]], [[5b2q]] - FtCas9 (mutant) + RNA + DNA – ''Francisella tularensis''<br />
**[[5b2o]], [[5b2p]], [[5b2q]] - FtCas9 (mutant) + RNA + DNA – ''Francisella tularensis''<br />
-
**[[6wc0]] - Cas9 + RNA + DNA – ''Acidothermus cellulolyticus''<br />
+
**[[6wbr]], [[6wc0]] - Cas9 + RNA + DNA – ''Acidothermus cellulolyticus''<br />
**[[6i1l]], [[6i1k]], [[6gtg]], [[6gtf]], [[6gte]], [[6gtd]], [[6gtc]] – FtCas12a (mutant) + RNA + DNA <br />
**[[6i1l]], [[6i1k]], [[6gtg]], [[6gtf]], [[6gte]], [[6gtd]], [[6gtc]] – FtCas12a (mutant) + RNA + DNA <br />
**[[6w62]] – Cas12i + RNA – ''Lachnospiraceae bacterium'' – Cryo EM<br />
**[[6w62]] – Cas12i + RNA – ''Lachnospiraceae bacterium'' – Cryo EM<br />
Line 252: Line 269:
**[[2gw6]] – hENN subunit sen15 – NMR<br />
**[[2gw6]] – hENN subunit sen15 – NMR<br />
**[[6z9u]] – hENN subunits sen15+sen34<br />
**[[6z9u]] – hENN subunits sen15+sen34<br />
 +
**[[7uxa]] – hENN + tRNA-Arg – Cryo EM<br />
**[[1a79]], [[1a76]], [[1a77]] - MjENN – ''Methanocaldococcus jannaschii''<br />
**[[1a79]], [[1a76]], [[1a77]] - MjENN – ''Methanocaldococcus jannaschii''<br />
**[[2cv8]] - ENN – ''Sulfolobus tokodaii''<br />
**[[2cv8]] - ENN – ''Sulfolobus tokodaii''<br />
Line 258: Line 276:
**[[2ohc]], [[2ohe]] - TaENN – ''Thermoplasma acidophilum''<br />
**[[2ohc]], [[2ohe]] - TaENN – ''Thermoplasma acidophilum''<br />
**[[2zyz]] – ENN – ''Pyrobaculum aerophilum''<br />
**[[2zyz]] – ENN – ''Pyrobaculum aerophilum''<br />
-
**[[3iey]] - ENN + NEQ261 – ''Nanoarchaeum equitans''<br />
+
**[[3if0]] - ENN + NEQ261 – ''Nanoarchaeum equitans''<br />
**[[3ajv]] - ApENN (mutant) – ''Aeropyrum pernix''<br />
**[[3ajv]] - ApENN (mutant) – ''Aeropyrum pernix''<br />
**[[3p1y]] - ApENN /AfENN<br />
**[[3p1y]] - ApENN /AfENN<br />
Line 283: Line 301:
*Sm ENN
*Sm ENN
-
**[[1smn]], [[1qae]], [[1ql0]], [[1g8t]] – ENN – ''Serratia marcescens''
+
**[[1smn]], [[1qae]], [[1ql0]], [[1g8t]], [[4e3y]] – ENN – ''Serratia marcescens''
*NaeI ENN
*NaeI ENN
Line 316: Line 334:
*HinDIII ENN
*HinDIII ENN
-
**[[2e52]], [[3a4k]] - HiENN + DNA
+
**[[2e52]], [[3a4k]], [[3wvg]], [[3wvh]], [[3wvi]], [[3wvk]], [[3wvp]] - HiENN + DNA
*HinP1I ENN
*HinP1I ENN
Line 331: Line 349:
**[[1ul1]] - hENN + PCNA <br />
**[[1ul1]] - hENN + PCNA <br />
**[[6tnz]] - hENN in processive polymerase – Cryo EM <br />
**[[6tnz]] - hENN in processive polymerase – Cryo EM <br />
 +
**[[7qo1]] - hENN + DNA ligase + PCNA + DNA – Cryo EM <br />
**[[1mc8]] - PhENN (mutant) <br />
**[[1mc8]] - PhENN (mutant) <br />
**[[3ory]]– ENN – ''Desulfurococcus amylolyticus''<br />
**[[3ory]]– ENN – ''Desulfurococcus amylolyticus''<br />
Line 339: Line 358:
**[[1rxz]] - AfENN + PCNA <br />
**[[1rxz]] - AfENN + PCNA <br />
**[[4wa8]] – ENN – ''Methanopyrus kandleri''<br />
**[[4wa8]] – ENN – ''Methanopyrus kandleri''<br />
 +
**[[6c33]] - MsENN – ''Mycobacterium smegmatis''<br />
 +
**[[6c34]], [[6c35]], [[6c36]] - MsENN (mutant) <br />
-
*DNA mismatch ENN
+
*DNA mismatch ENN or Pms2
-
**[[1h7u]] – hENN<br />
+
**[[1h7u]], [[7rck]] – hENN + ATP<br />
-
**[[6mfq]] – hENN Pms2<br />
+
**[[7rci]] - hENN (mutant) + ATP<br />
 +
**[[6mfq]], [[7rcb]] – hENN Pms2<br />
**[[5u5r]] – hENN + importin<br />
**[[5u5r]] – hENN + importin<br />
**[[1odg]] - EcENN + DNA<br />
**[[1odg]] - EcENN + DNA<br />
 +
**[[5x9y]] – ENN MutL – ''Aquifex aeolicus''<br />
*Vvn ENN
*Vvn ENN
Line 351: Line 374:
**[[1ouo]] – VvENN – ''Vibrio vulnificus''<br />
**[[1ouo]] – VvENN – ''Vibrio vulnificus''<br />
**[[1oup]], [[2ivk]] - VvENN + DNA
**[[1oup]], [[2ivk]] - VvENN + DNA
 +
 +
*Splicing ENN
 +
 +
**[[1r0v]], [[1r11]], [[1rlv]] – AfENN
*Structure-specific ENN
*Structure-specific ENN
Line 365: Line 392:
*BfiI ENN
*BfiI ENN
-
**[[2c1l]] – ENN – ''Bacillus firmus''
+
**[[2c1l]] – BfENN – ''Bacillus firmus''<br />
 +
**[[3zi5]] – BfENN + DNA<br />
*SfiI ENN
*SfiI ENN
Line 432: Line 460:
**[[2ziv]] – hENN EME1 (mutant) + Mus81<br />
**[[2ziv]] – hENN EME1 (mutant) + Mus81<br />
**[[6vwb]] – hENN Mus81 N-terminal - NMR<br />
**[[6vwb]] – hENN Mus81 N-terminal - NMR<br />
 +
**[[2mc3]] – hENN Mus81 winged-helix domain - NMR<br />
**[[4p0p]], [[4p0q]], [[4p0r]], [[4p0s]] – hENN EME1 + Mus81 + DNA<br />
**[[4p0p]], [[4p0q]], [[4p0r]], [[4p0s]] – hENN EME1 + Mus81 + DNA<br />
**[[2kpf]] - mENN – mouse<br />
**[[2kpf]] - mENN – mouse<br />
Line 472: Line 501:
**[[4och]], [[4od6]] - DrENN SMR domain<br />
**[[4och]], [[4od6]] - DrENN SMR domain<br />
 +
**[[7vuf]] - TtENN core<br />
 +
**[[7vuk]] - TtENN core + ADP<br />
*Endoms ENN
*Endoms ENN
Line 509: Line 540:
**[[6uke]], [[6ukf]], [[6ukg]], [[6ukh]], [[6uki]] – ENN + DNA – ''Haemophilus parahaemolyticus'' <br />
**[[6uke]], [[6ukf]], [[6ukg]], [[6ukh]], [[6uki]] – ENN + DNA – ''Haemophilus parahaemolyticus'' <br />
 +
 +
*Cap-snatching ENN see [[RNA polymerase]]
*'''Intron-encoded endonuclease'''
*'''Intron-encoded endonuclease'''

Revision as of 09:46, 16 February 2023

3D structures of endonuclease

Updated on 16-February-2023 {{#tree:id=OrganizedByTopic|openlevels=0|

  • ENN-I
    • 1bix - hENN – human
    • 5um9, 5kse, 5k97 – hENN (mutant) + DNA
    • 1cfr – ENN – Citrobacter freundii
    • 1af5 - CrENN – Chlamydomonas reinhardtii
    • 1fzr, 1m0d, 1m0i, 3cae – T7ENN - Enterobacteria phage T7
    • 2g7e, 2g7f – VcENN – Vibrio cholera
    • 2vnd - VcENN (mutant)
    • 2pu3 - VsENN – Vibrio salmonicida
  • ENN-II
  • ENN-III
    • 2abk, 1ako - EcENN – Escherichia coli
    • 1orn, 1orp, 1p59 - GsENN + DNA – Geobacillus stearothermophilus
    • 4l0k, 4unf – DrENN-1 – Deinococcus radiodurans
    • 8a5c, 8a5f – DrENN-1 (mutant)
    • 4uob – DrENN-3
    • 8a5g – DrENN-3 (mutant)
  • ENN-IV
    • 1qtw - EcENN
    • 2nqh - EcENN (mutant)
    • 1qum – EcENN + DNA
    • 2nqj, 2nq9, 4k1g - EcENN (mutant) + DNA
    • 1xp3 - ENN – Bacillus anthracis
    • 3aal - GkENN – Geobacillus kaustophilus
    • 3aam - TtENN – Thermus thermophilus
    • 2x7v, 2x7w - TmENN - Thermotoga maritima
  • ENN-V
  • ENN-VII
  • ENN-VIII
  • ENN-VIII-like or NEIL1
  • AP ENN
    • 3ngf - ENN - Brucella melitensis
    • 2j63 – ENN – Leishmania major
  • Cas ENN
    • 1wj9, [[4ej3], 6ke1] – TtCas
    • 4n06 – AfCas1 - Archaeoglobus fulgidus
    • 3god – PaCas1 – Pseudomonas aeruginosa
    • 3nkd – EcCas1
    • 4wj0 – PhCas1 - Pyrococcus horikoshii
    • 4xtk – TmCas1
    • 5fcl – Cas1 - Pectobacterium atrosepticum
    • 4zkj - SpCas1 – Streptococcus pyogenes
    • 3oq2 – Cas2 – Desulfovibrio vulgaris
    • 4mak – EcCas2
    • 6jhz – EcCas2 + peptide
    • 4p6i, 4qdl – EcCas1 + EcCas2
    • 6qy3 – GsCas1 + EcCas2 + Csn2 – Cryo EM
    • 7cr6, 7cr8 – Cas1 + Cas2 + DNA – Synechocystis
    • 7ei1 – PfCas1 + Cas2 - Pyrococcus furiosus
    • 3s4l – MjCas3 – Methanocaldococcus jannaschii
    • 4qqw – TfCas3 – Thermobifida fusca
    • 4qqx – TfCas3 + ATP
    • 4qqy – TfCas3 + ADP
    • 4qqz – TfCas3 + AMPPNP
    • 4q2c - TteCas3 – Thermobaclum terrenum
    • 4q2d - TteCas3 + ATP
    • 3i4h – Cas4 - Pyrobaculum calidifontis
    • 6njy – Cas6 - Mahella australiensis
    • 4qr0, 4qr1, 6o56 - SpCas9 (Csn1) – Streptococcus pyogenes
    • 7vk9 - SpCas9 (mutant)
    • 7mpz - GsCas9 HNH nuclease domain
    • 8f43 - GsCas9 HNH nuclease domain (mutant)
    • 4ilr, 3zfv – SsCas6
    • 3i4h – PfCas6 - Pyrococcus furiosus
    • 4dzd – EcCas6e
    • 7jzx – PaCas6f in crispr-Cas surveillance complex – Cryo EM
    • 4qr0, 4qr1, 4cmp, 4cmq - SpCas9
    • 4ogc, 4oge – Cas9 II-C – Actinomyces naeslundii
    • 3ung, 3ur3, 4doz, 4w8y – PfCas10 CMR2 subunit
    • 4h4k – PfCas10 CMR2+CMR3 subunits
    • 3w2v – PfCas10 CMR2+CMR3 subunits + AMP
    • 3w2w – PfCas10 CMR2+CMR3 subunits + ATP
    • 4gkf – PfCas10 CMR5 subunit
    • 6w62 – Cas12i + RNA – Lachnospiraceae bacterium – Cryo EM
    • 4an8, 4f3e – TtCasA (Cse1)
    • 4h3t - CasA (Cse1) – Acidimicrobium ferrooxidans
    • 4h79 - TfCasB (Cse2)
    • 3wa8 - CasB (Cse2) – Meiothermus ruber
    • 4h7a - TtCasB (Cse2)
    • 4tvx – EcCasA (Cse1) + CasE
    • 3qhq - Csn2 – Streptococcus agalactiae
    • 3toc, 3v7f – SpCsn2
    • 3ps0 – SsCsa2
  • Cas ENN complex with RNA and DNA
  • EcoKI ENN
    • 2ar0 – EcENN (mutant)
  • Ecoo109I ENN
  • EcoRI ENN
  • EcoRII ENN
  • EcoRV ENN
  • BamHI ENN
  • Bax1 ENN
    • 6p4o, 6p4w – StENN + DNA-dependent ATPase XPBII – Sulfurisphera tokidaii
    • 6p4f – StENN + DNA-dependent ATPase XPBII + DNA
    • 6p66 – AfENN + Rad25
  • Bbvci ENN
    • 6mag, 6m9g, 6eg7 – BbENN subunit 2 – Brevibacillus brevis
    • 6maf – BbENN subunits 1+2
  • FokI ENN
    • 1fok – PoENN + DNA – Planomicrobium okeanokoites
    • 2fok – PoENN
  • LAGLIDAD ENN
    • 4z1x – fyENN + DNA – fission yeast
    • 5e5o – ENN + DNA – Sordaria macropora
  • PvuII ENN
  • tRNA-splicing ENN
    • 2gw6 – hENN subunit sen15 – NMR
    • 6z9u – hENN subunits sen15+sen34
    • 7uxa – hENN + tRNA-Arg – Cryo EM
    • 1a79, 1a76, 1a77 - MjENN – Methanocaldococcus jannaschii
    • 2cv8 - ENN – Sulfolobus tokodaii
    • 2gjw - AfENN + RNA – Archaeoglobus fulgidus
    • 1r0v, 1r11 – AfENN
    • 2ohc, 2ohe - TaENN – Thermoplasma acidophilum
    • 2zyz – ENN – Pyrobaculum aerophilum
    • 3if0 - ENN + NEQ261 – Nanoarchaeum equitans
    • 3ajv - ApENN (mutant) – Aeropyrum pernix
    • 3p1y - ApENN /AfENN
    • 3p1z - ApENN + protein
  • VSR ENN
  • BglI ENN
  • BglII ENN
  • MunI ENN
    • 1d02 - ENN (mutant) + DNA - Mycoplasma
  • Sm ENN
  • NaeI ENN
    • 1ev7 - LaENN – Lechevalieria aerocolonigenes
    • 1iaw - LaENN + DNA
  • NgoMIV ENN
    • 1fiu, 4abt - ENN + DNA – Neisseria gonorrheae
  • NEI ENN
  • BsoBI ENN
  • Bse634I ENN
  • HincII ENN
  • HinDIII ENN
  • HinP1I ENN
  • Flap ENN
    • 5zod - hENN
    • 3q8k, 3q8l, 3q8m - hENN + DNA
    • 5zog, 5zof, 5zoe - hENN (mutant) + DNA
    • 5fv7 - hENN + inhibitor
    • 1ul1 - hENN + PCNA
    • 6tnz - hENN in processive polymerase – Cryo EM
    • 7qo1 - hENN + DNA ligase + PCNA + DNA – Cryo EM
    • 1mc8 - PhENN (mutant)
    • 3ory– ENN – Desulfurococcus amylolyticus
    • 1rxv, 1rxw - AfENN + DNA
    • 2izo - SsENN + PCNA – Sulfolobus solfataricus
    • 1a76, 1a77 - MjENN
    • 1b43 – PfENN – Pyrococcus furiosus
    • 1rxz - AfENN + PCNA
    • 4wa8 – ENN – Methanopyrus kandleri
    • 6c33 - MsENN – Mycobacterium smegmatis
    • 6c34, 6c35, 6c36 - MsENN (mutant)
  • DNA mismatch ENN or Pms2
    • 1h7u, 7rck – hENN + ATP
    • 7rci - hENN (mutant) + ATP
    • 6mfq, 7rcb – hENN Pms2
    • 5u5r – hENN + importin
    • 1odg - EcENN + DNA
    • 5x9y – ENN MutL – Aquifex aeolicus
  • Vvn ENN
    • 1ouo – VvENN – Vibrio vulnificus
    • 1oup, 2ivk - VvENN + DNA
  • Splicing ENN
  • Structure-specific ENN
    • 4zou – hENN SLX4 subunit BTB domain
    • 4uyi – hENN SLX4 subunit BTB domain (mutant)
    • 7cq4 – yENN SLX1 (mutant)+SLX4 subunits + DNA
    • 4xm5 – CgENN SLX1 subunit – Candida glabrata
    • 4xlg – CgENN SLX1 (mutant)+SLX4 subunits
    • 4zdt – fyENN SLX1+SLX4 subunits
    • 6seh – ThtENN SLX1 (mutant)+SLX4 subunits – Thielavia terrestris
    • 6sei – ThtENN SLX1 (mutant)+SLX4 subunits + DNA
  • BfiI ENN
    • 2c1l – BfENN – Bacillus firmus
    • 3zi5 – BfENN + DNA
  • SfiI ENN
  • Ecl18kI ENN
    • 2fqz, 2gb7 – ENN + DNA – Enterobacter cloacae
  • SdaI ENN
    • 2ixs – ENN – Streptomyces diastaticus
  • PabI ENN
    • 2dvy – ENN – Pyrococcus abyssi
  • PspGI ENN
    • 3bm3 – ENN – Pyrococcus
  • HNH ENN
    • 4h6d – ENN – Geobacter metallireducens
    • 5h0o, 5h0m – ENN – Geobacillus virus E2
    • 5cxr – ENN + pyrazole derivative – Influenza virus
    • 6j9l] - NmENN + AcriiC2
    • 6yex – VcENN – Vibrio campbellii
    • 6yjb, 6ykf, 6ymg – VcENN + DNA
  • UV damage ENN
  • NotI ENN
    • 3bvq - NoENN – Nocardia otitidiscaviarum
    • 3c25 - NoENN + DNA
  • BpujI ENN
  • Sau3AI ENN
    • 2reu – SaENN C terminal – Staphylococcus aureus
    • 4pxg – SaENN (mutant)
  • HpyI ENN
    • 3fc3, 3gox – HpENN99 + DNA – Helicobacter pylori
    • 3or3 – HpENN88 + DNA
  • PacI ENN
    • 3ldy, 3m7k - PaENN + DNA – Psdeudomonas alcaligenes
  • Crossover junction ENN
    • 2ziw, 2zix, 2ziu – hENN EME1 + Mus81
    • 2ziv – hENN EME1 (mutant) + Mus81
    • 6vwb – hENN Mus81 N-terminal - NMR
    • 2mc3 – hENN Mus81 winged-helix domain - NMR
    • 4p0p, 4p0q, 4p0r, 4p0s – hENN EME1 + Mus81 + DNA
    • 2kpf - mENN – mouse
  • OkrAI ENN
    • 3odh - ENN + DNA – Oceanobacter kriegii
  • BspD6I ENN
    • 2ewf - ENN – Bacillus
  • ThaI ENN
  • Xpf ENN
    • 1z00, 2a1j - hENN C terminal + DNA excision repair protein
    • 6sxa - hENN + DNA excision repair protein – Cryo EM
    • 6sxb - hENN + DNA excision repair protein + DNA – Cryo EM
    • 2aq0 – hENN residues 823-905 – NMR
    • 2kn7 – hENN residues 823-905 + DNA – NMR
    • 2bgw - ApENN + DNA
    • 2bhn - ApENN
  • Mazf3 ENN
    • 5uct, 5cca - MtENN – Mycobacterium tuberculosis
  • Vapc ENN
    • 5wzf, 5wz4 – MtENN-20
    • 5ed0, 5ecy – SfENN – Shigella flexneri
    • 5ecy, 5ecw, 5ecd – SfENN (mutant)
    • 6ifc – StENN + Vapb – Salmonella typhimurium
    • 6ifm – StENN + Vapb + DNA
  • Muts2 ENN
  • Endoms ENN
  • ENN G
  • ENN Q
  • ENN S
    • 5ybb – ENN + R-M system + DNA – Caldanaerobacter subterraneus
  • Apurinic-apyrimidinic ENN or APE
  • Restriction ENN Pfoi
    • 6ek1 – PfENN – Pseudomons fluorescens
    • 6eko – PfENN (mutant) + DNA
  • Restriction ENN Hhai
  • Intron-encoded endonuclease
  • I-PpoI ENN
  • I-CreI ENN
  • I-CeuI ENN
    • 2ex5 - ENN (mutant) + DNA – Chlamydomonas eugametos
  • I-DmoI ENN
  • I-AniI ENN
    • 1p8k, 2qoj, 3uvf - EnENN + DNA – Emericella nidulans
    • 3eh8 - EnENN (mutant) + DNA
  • I-HmuI ENN
    • 1u3e - ENN + DNA – Bacillus phage spo1
  • I-TevI ENN
  • I-SceI ENN
  • I-PkoII ENN
  • I-MspI ENN
  • I-PfuI ENN
  • I-Tsp061I ENN
    • 2dch – ENN – Thermoproteus
  • I-Vdi141I ENN
    • 3e54 – ENN – Vulcanisaeta distribute
  • I-MtuI ENN
  • I-MsoI ENN
    • 1m5x, 3fd2 – MoENN + DNA – Monomastix
    • 3ko2 – MoENN (mutant) + DNA
  • I-GzeMII ENN
    • 4efj – ENN + DNA – Gibberella zeae
  • I-tRNA ENN
    • 4fz2 – ENN – Candidatus micrarchaeum
  • I-Cvui ENN

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Proteopedia Page Contributors and Editors (what is this?)

Michal Harel

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