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| | <StructureSection load='4r79' size='340' side='right'caption='[[4r79]], [[Resolution|resolution]] 3.10Å' scene=''> | | <StructureSection load='4r79' size='340' side='right'caption='[[4r79]], [[Resolution|resolution]] 3.10Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[4r79]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Droma Droma]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4R79 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4R79 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4r79]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Drosophila_mauritiana Drosophila mauritiana] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4R79 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4R79 FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2f7t|2f7t]], [[3hos|3hos]], [[3hot|3hot]], [[4u7b|4u7b]]</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4r79 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4r79 OCA], [https://pdbe.org/4r79 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4r79 RCSB], [https://www.ebi.ac.uk/pdbsum/4r79 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4r79 ProSAT]</span></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">mariner\T, T ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7226 DROMA])</td></tr>
| + | |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4r79 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4r79 OCA], [http://pdbe.org/4r79 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4r79 RCSB], [http://www.ebi.ac.uk/pdbsum/4r79 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4r79 ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | == Function == | | == Function == |
| - | [[http://www.uniprot.org/uniprot/MOS1T_DROMA MOS1T_DROMA]] Mediates transposition of transposon Mos1 by a 'cut and paste' mechanism. Transposases are sequence-specific nucleases and strand transferases that catalyze transposition through an ordered series of events: sequence-specific binding of transposase to the terminal inverted repeats (IR) present at each end of the transposon, pairing of the transposon IRs in a paired-end complex (PEC), cleavage of one or both DNA strands at each transposon end, capture of target DNA, and strand transfer to insert the transposon at a new site. | + | [https://www.uniprot.org/uniprot/MOS1T_DROMA MOS1T_DROMA] Mediates transposition of transposon Mos1 by a 'cut and paste' mechanism. Transposases are sequence-specific nucleases and strand transferases that catalyze transposition through an ordered series of events: sequence-specific binding of transposase to the terminal inverted repeats (IR) present at each end of the transposon, pairing of the transposon IRs in a paired-end complex (PEC), cleavage of one or both DNA strands at each transposon end, capture of target DNA, and strand transfer to insert the transposon at a new site. |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | | | |
| | ==See Also== | | ==See Also== |
| - | *[[Transposase|Transposase]] | + | *[[Transposase 3D structures|Transposase 3D structures]] |
| | == References == | | == References == |
| | <references/> | | <references/> |
| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Droma]] | + | [[Category: Drosophila mauritiana]] |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Richardson, J M]] | + | [[Category: Synthetic construct]] |
| - | [[Category: Dna cleavage]] | + | [[Category: Richardson JM]] |
| - | [[Category: Dna integration]]
| + | |
| - | [[Category: Dna transposition]]
| + | |
| - | [[Category: Inverted repeat]]
| + | |
| - | [[Category: Protein-dna complex]]
| + | |
| - | [[Category: Recombination-dna complex]]
| + | |
| - | [[Category: Rnase-h like catalytic fold helix-turn-helix]]
| + | |
| - | [[Category: Transposase]]
| + | |
| - | [[Category: Transposon]]
| + | |
| - | [[Category: Transpososome]]
| + | |
| Structural highlights
Function
MOS1T_DROMA Mediates transposition of transposon Mos1 by a 'cut and paste' mechanism. Transposases are sequence-specific nucleases and strand transferases that catalyze transposition through an ordered series of events: sequence-specific binding of transposase to the terminal inverted repeats (IR) present at each end of the transposon, pairing of the transposon IRs in a paired-end complex (PEC), cleavage of one or both DNA strands at each transposon end, capture of target DNA, and strand transfer to insert the transposon at a new site.
Publication Abstract from PubMed
The inverted repeat (IR) sequences delimiting the left and right ends of many naturally active mariner DNA transposons are non-identical and have different affinities for their transposase. We have compared the preferences of two active mariner transposases, Mos1 and Mboumar-9, for their imperfect transposon IRs in each step of transposition: DNA binding, DNA cleavage, and DNA strand transfer. A 3.1 A resolution crystal structure of the Mos1 paired-end complex containing the pre-cleaved left IR sequences reveals the molecular basis for the reduced affinity of the Mos1 transposase DNA-binding domain for the left IR as compared with the right IR. For both Mos1 and Mboumar-9, in vitro DNA transposition is most efficient when the preferred IR sequence is present at both transposon ends. We find that this is due to the higher efficiency of cleavage and strand transfer of the preferred transposon end. We show that the efficiency of Mboumar-9 transposition is improved almost 4-fold by changing the 3' base of the preferred Mboumar-9 IR from guanine to adenine. This preference for adenine at the reactive 3' end for both Mos1 and Mboumar-9 may be a general feature of mariner transposition.
Structural Basis for the Inverted Repeat Preferences of mariner Transposases.,Trubitsyna M, Grey H, Houston DR, Finnegan DJ, Richardson JM J Biol Chem. 2015 May 22;290(21):13531-40. doi: 10.1074/jbc.M115.636704. Epub, 2015 Apr 13. PMID:25869132[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Trubitsyna M, Grey H, Houston DR, Finnegan DJ, Richardson JM. Structural Basis for the Inverted Repeat Preferences of mariner Transposases. J Biol Chem. 2015 May 22;290(21):13531-40. doi: 10.1074/jbc.M115.636704. Epub, 2015 Apr 13. PMID:25869132 doi:http://dx.doi.org/10.1074/jbc.M115.636704
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