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| | <StructureSection load='4r7p' size='340' side='right'caption='[[4r7p]], [[Resolution|resolution]] 3.35Å' scene=''> | | <StructureSection load='4r7p' size='340' side='right'caption='[[4r7p]], [[Resolution|resolution]] 3.35Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[4r7p]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4R7P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4R7P FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4r7p]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4R7P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4R7P FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=UPG:URIDINE-5-DIPHOSPHATE-GLUCOSE'>UPG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=UPG:URIDINE-5-DIPHOSPHATE-GLUCOSE'>UPG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3r2w|3r2w]], [[3r3i|3r3i]]</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4r7p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4r7p OCA], [https://pdbe.org/4r7p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4r7p RCSB], [https://www.ebi.ac.uk/pdbsum/4r7p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4r7p ProSAT]</span></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">UGP2, UGP1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
| + | |
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/UTP--glucose-1-phosphate_uridylyltransferase UTP--glucose-1-phosphate uridylyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.9 2.7.7.9] </span></td></tr>
| + | |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4r7p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4r7p OCA], [http://pdbe.org/4r7p PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4r7p RCSB], [http://www.ebi.ac.uk/pdbsum/4r7p PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4r7p ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | == Function == | | == Function == |
| - | [[http://www.uniprot.org/uniprot/UGPA_HUMAN UGPA_HUMAN]] Plays a central role as a glucosyl donor in cellular metabolic pathways. | + | [https://www.uniprot.org/uniprot/UGPA_HUMAN UGPA_HUMAN] Plays a central role as a glucosyl donor in cellular metabolic pathways. |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Human]] | + | [[Category: Homo sapiens]] |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: UTP--glucose-1-phosphate uridylyltransferase]]
| + | [[Category: Baruch P]] |
| - | [[Category: Baruch, P]] | + | [[Category: Cramer JT]] |
| - | [[Category: Cramer, J T]] | + | [[Category: Fedorov R]] |
| - | [[Category: Fedorov, R]] | + | [[Category: Fuehring J]] |
| - | [[Category: Fuehring, J]] | + | [[Category: Gerardy-Schahn R]] |
| - | [[Category: Gerardy-Schahn, R]] | + | [[Category: Schneider J]] |
| - | [[Category: Schneider, J]] | + | |
| - | [[Category: Glc-1-p]]
| + | |
| - | [[Category: Pyrophosphorylase]]
| + | |
| - | [[Category: Rossmann-like alpha/beta/alpha sandwich fold]]
| + | |
| - | [[Category: Transferase]]
| + | |
| - | [[Category: Utp]]
| + | |
| Structural highlights
Function
UGPA_HUMAN Plays a central role as a glucosyl donor in cellular metabolic pathways.
Publication Abstract from PubMed
In mammals, UDP-glucose pyrophosphorylase (UGP) is the only enzyme capable of activating glucose-1-phosphate (Glc-1-P) to UDP-glucose (UDP-Glc), a metabolite located at the intersection of virtually all metabolic pathways in the mammalian cell. Despite the essential role of its product, the molecular basis of UGP function is poorly understood. Here we report the crystal structure of human UGP in complex with its product UDP-Glc. Beyond providing first insight into the active site architecture, we describe the substrate binding mode and intermolecular interactions in the octameric enzyme that are crucial to its activity. Importantly, the quaternary mechanism identified for human UGP in this study may be common for oligomeric sugar-activating nucleotidyltransferases. Elucidating such mechanisms is essential for understanding nucleotide sugar metabolism and opens the perspective for the development of drugs that specifically inhibit simpler organized nucleotidyltransferases in pathogens.
A Quaternary Mechanism Enables the Complex Biological Functions of Octameric Human UDP-glucose Pyrophosphorylase, a Key Enzyme in Cell Metabolism.,Fuhring JI, Cramer JT, Schneider J, Baruch P, Gerardy-Schahn R, Fedorov R Sci Rep. 2015 Apr 10;5:9618. doi: 10.1038/srep09618. PMID:25860585[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Fuhring JI, Cramer JT, Schneider J, Baruch P, Gerardy-Schahn R, Fedorov R. A Quaternary Mechanism Enables the Complex Biological Functions of Octameric Human UDP-glucose Pyrophosphorylase, a Key Enzyme in Cell Metabolism. Sci Rep. 2015 Apr 10;5:9618. doi: 10.1038/srep09618. PMID:25860585 doi:http://dx.doi.org/10.1038/srep09618
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