7vnu
From Proteopedia
(Difference between revisions)
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==Crystal structure of the N-terminal domain of SARS-CoV-2 nucleocapsid protein== | ==Crystal structure of the N-terminal domain of SARS-CoV-2 nucleocapsid protein== | ||
| - | <StructureSection load='7vnu' size='340' side='right'caption='[[7vnu]]' scene=''> | + | <StructureSection load='7vnu' size='340' side='right'caption='[[7vnu]], [[Resolution|resolution]] 1.95Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7VNU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7VNU FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[7vnu]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Severe_acute_respiratory_syndrome_coronavirus_2 Severe acute respiratory syndrome coronavirus 2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7VNU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7VNU FirstGlance]. <br> |
| - | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7vnu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7vnu OCA], [https://pdbe.org/7vnu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7vnu RCSB], [https://www.ebi.ac.uk/pdbsum/7vnu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7vnu ProSAT]</span></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene></td></tr> |
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7vnu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7vnu OCA], [https://pdbe.org/7vnu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7vnu RCSB], [https://www.ebi.ac.uk/pdbsum/7vnu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7vnu ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/NCAP_SARS2 NCAP_SARS2] Packages the positive strand viral genome RNA into a helical ribonucleocapsid (RNP) and plays a fundamental role during virion assembly through its interactions with the viral genome and membrane protein M. Plays an important role in enhancing the efficiency of subgenomic viral RNA transcription as well as viral replication. | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | The coronavirus nucleocapsid (N) protein interacts with non-structural protein 3 (Nsp3) to facilitate viral RNA synthesis and stabilization. However, structural information on the N-Nsp3 complex is limited. Here, we report a 2.6 A crystal structure of the N-terminal domain (NTD) of the N protein in complex with the ubiquitin-like domain 1 (Ubl1) of Nsp3 in severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). One NTD and two Ubl1s formed a stable heterotrimer. We performed mutational analysis to reveal the key residues for this interaction. We confirmed the colocalization of SARS-CoV-2 N and Nsp3 in Huh-7 cells. N-Ubl1 interaction also exists in SARS-CoV and Middle East respiratory syndrome coronavirus. We found that SARS-CoV-2 Ubl1 competes with RNA to bind N protein in a dose-dependent manner. Based on our results, we propose a model for viral ribonucleoprotein dissociation through N protein binding to Ubl1 of Nsp3. | ||
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| + | Structural insights into ribonucleoprotein dissociation by nucleocapsid protein interacting with non-structural protein 3 in SARS-CoV-2.,Ni X, Han Y, Zhou R, Zhou Y, Lei J Commun Biol. 2023 Feb 18;6(1):193. doi: 10.1038/s42003-023-04570-2. PMID:36806252<ref>PMID:36806252</ref> | ||
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| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| + | </div> | ||
| + | <div class="pdbe-citations 7vnu" style="background-color:#fffaf0;"></div> | ||
| + | |||
| + | ==See Also== | ||
| + | *[[Nucleoprotein 3D structures|Nucleoprotein 3D structures]] | ||
| + | == References == | ||
| + | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| + | [[Category: Severe acute respiratory syndrome coronavirus 2]] | ||
[[Category: Lei J]] | [[Category: Lei J]] | ||
[[Category: Ni XC]] | [[Category: Ni XC]] | ||
[[Category: Zhou RJ]] | [[Category: Zhou RJ]] | ||
Revision as of 07:44, 8 March 2023
Crystal structure of the N-terminal domain of SARS-CoV-2 nucleocapsid protein
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