2n62

From Proteopedia

(Difference between revisions)

Revision as of 10:21, 15 March 2023

ddFLN5+110

Structural highlights

2n62 is a 1 chain structure with sequence from Dictyostelium discoideum and Escherichia coli. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance.
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

GELA_DICDI F-actin cross-linking protein.SECM_ECOLI Regulates secA expression by translational coupling of the secM secA operon. Ribosomes translating the C-terminal region of secM can disrupt an RNA repressor helix that normally blocks secA translation initiation, derepressing the expression of secA. Translational pausing of secM at Pro-166 under secretion-limiting conditions increases the duration of the disruption and thus increases secA expression. This is controlled by interaction of the secM signal peptide with secA and the translocon, possibly by secA pulling the paused secM out of the ribosome. The arrest sequence (150-FXXXXWIXXXXGIRAGP-166) is sufficient to cause arrest of unrelated proteins. Elongation arrest can be alleviated by mutations in the 23S rRNA or in ribosomal protein L22.

Publication Abstract from PubMed

Although detailed pictures of ribosome structures are emerging, little is known about the structural and cotranslational folding properties of nascent polypeptide chains at the atomic level. Here we used solution-state NMR spectroscopy to define a structural ensemble of a ribosome-nascent chain complex (RNC) formed during protein biosynthesis in Escherichia coli, in which a pair of immunoglobulin-like domains adopts a folded N-terminal domain (FLN5) and a disordered but compact C-terminal domain (FLN6). To study how FLN5 acquires its native structure cotranslationally, we progressively shortened the RNC constructs. We found that the ribosome modulates the folding process, because the complete sequence of FLN5 emerged well beyond the tunnel before acquiring native structure, whereas FLN5 in isolation folded spontaneously, even when truncated. This finding suggests that regulating structure acquisition during biosynthesis can reduce the probability of misfolding, particularly of homologous domains.

A structural ensemble of a ribosome-nascent chain complex during cotranslational protein folding.,Cabrita LD, Cassaignau AM, Launay HM, Waudby CA, Wlodarski T, Camilloni C, Karyadi ME, Robertson AL, Wang X, Wentink AS, Goodsell LS, Woolhead CA, Vendruscolo M, Dobson CM, Christodoulou J Nat Struct Mol Biol. 2016 Apr;23(4):278-85. doi: 10.1038/nsmb.3182. Epub 2016 Feb, 29. PMID:26926436^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Cabrita LD, Cassaignau AM, Launay HM, Waudby CA, Wlodarski T, Camilloni C, Karyadi ME, Robertson AL, Wang X, Wentink AS, Goodsell LS, Woolhead CA, Vendruscolo M, Dobson CM, Christodoulou J. A structural ensemble of a ribosome-nascent chain complex during cotranslational protein folding. Nat Struct Mol Biol. 2016 Apr;23(4):278-85. doi: 10.1038/nsmb.3182. Epub 2016 Feb, 29. PMID:26926436 doi:http://dx.doi.org/10.1038/nsmb.3182

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2n62"

@@ Line 1: / Line 1: @@
 ==ddFLN5+110==
-<StructureSection load='2n62' size='340' side='right'caption='[[2n62]], [[NMR_Ensembles_of_Models | 3 NMR models]]' scene=''>
+<StructureSection load='2n62' size='340' side='right'caption='[[2n62]]' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2n62]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_11735 Atcc 11735]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2N62 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2N62 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2n62]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Dictyostelium_discoideum Dictyostelium discoideum] and [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2N62 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2N62 FirstGlance]. <br>
 </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2n62 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2n62 OCA], [https://pdbe.org/2n62 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2n62 RCSB], [https://www.ebi.ac.uk/pdbsum/2n62 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2n62 ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[https://www.uniprot.org/uniprot/GELA_DICDI GELA_DICDI]] F-actin cross-linking protein.
+[https://www.uniprot.org/uniprot/GELA_DICDI GELA_DICDI] F-actin cross-linking protein.[https://www.uniprot.org/uniprot/SECM_ECOLI SECM_ECOLI] Regulates secA expression by translational coupling of the secM secA operon. Ribosomes translating the C-terminal region of secM can disrupt an RNA repressor helix that normally blocks secA translation initiation, derepressing the expression of secA. Translational pausing of secM at Pro-166 under secretion-limiting conditions increases the duration of the disruption and thus increases secA expression. This is controlled by interaction of the secM signal peptide with secA and the translocon, possibly by secA pulling the paused secM out of the ribosome. The arrest sequence (150-FXXXXWIXXXXGIRAGP-166) is sufficient to cause arrest of unrelated proteins. Elongation arrest can be alleviated by mutations in the 23S rRNA or in ribosomal protein L22.
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 21: / Line 21: @@
 __TOC__
 </StructureSection>
-[[Category: Atcc 11735]]
+[[Category: Dictyostelium discoideum]]
+[[Category: Escherichia coli]]
 [[Category: Large Structures]]
-[[Category: Cabrita, L D]]
+[[Category: Cabrita LD]]
-[[Category: Camilloni, C]]
+[[Category: Camilloni C]]
-[[Category: Cassaignau, A M.E]]
+[[Category: Cassaignau AME]]
-[[Category: Christodoulou, J]]
+[[Category: Christodoulou J]]
-[[Category: Dobson, C M]]
+[[Category: Dobson CM]]
-[[Category: Launay, H M.M]]
+[[Category: Launay HMM]]
-[[Category: Robertson, A L]]
+[[Category: Robertson AL]]
-[[Category: Vendruscolo, M]]
+[[Category: Vendruscolo M]]
-[[Category: Wang, X]]
+[[Category: Wang X]]
-[[Category: Waudby, C A]]
+[[Category: Waudby CA]]
-[[Category: Wentink, A S]]
+[[Category: Wentink AS]]
-[[Category: Wlodarski, T]]
+[[Category: Wlodarski T]]
-[[Category: Translation]]

2n62

From Proteopedia

Revision as of 10:21, 15 March 2023

ddFLN5+110

Structural highlights

Function

Publication Abstract from PubMed

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

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