This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


8ez5

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "8ez5" [edit=sysop:move=sysop])
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 8ez5 is ON HOLD
+
==RT XFEL structure of the two-flash state of Photosystem II (2F, S3-rich) at 2.09 Angstrom resolution==
-
 
+
<StructureSection load='8ez5' size='340' side='right'caption='[[8ez5]], [[Resolution|resolution]] 2.09&Aring;' scene=''>
-
Authors:
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[8ez5]] is a 20 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermosynechococcus_vestitus_BP-1 Thermosynechococcus vestitus BP-1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8EZ5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8EZ5 FirstGlance]. <br>
-
Description:
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BCR:BETA-CAROTENE'>BCR</scene>, <scene name='pdbligand=BCT:BICARBONATE+ION'>BCT</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CLA:CHLOROPHYLL+A'>CLA</scene>, <scene name='pdbligand=DGD:DIGALACTOSYL+DIACYL+GLYCEROL+(DGDG)'>DGD</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=FME:N-FORMYLMETHIONINE'>FME</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=LHG:1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE'>LHG</scene>, <scene name='pdbligand=LMG:1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE'>LMG</scene>, <scene name='pdbligand=OEX:CA-MN4-O5+CLUSTER'>OEX</scene>, <scene name='pdbligand=OEY:CA-MN4-O6+CLUSTER'>OEY</scene>, <scene name='pdbligand=PHO:PHEOPHYTIN+A'>PHO</scene>, <scene name='pdbligand=PL9:2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE'>PL9</scene>, <scene name='pdbligand=SQD:1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL'>SQD</scene>, <scene name='pdbligand=STE:STEARIC+ACID'>STE</scene></td></tr>
-
[[Category: Unreleased Structures]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8ez5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8ez5 OCA], [https://pdbe.org/8ez5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8ez5 RCSB], [https://www.ebi.ac.uk/pdbsum/8ez5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8ez5 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/PSBA1_THEVB PSBA1_THEVB] Photosystem II (PSII) is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. The D1/D2 (PsbA/PsbA) reaction center heterodimer binds P680, the primary electron donor of PSII as well as several subsequent electron acceptors.[HAMAP-Rule:MF_01379]<ref>PMID:20558739</ref> <ref>PMID:21367867</ref> <ref>PMID:25006873</ref>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Thermosynechococcus vestitus BP-1]]
 +
[[Category: Adams PD]]
 +
[[Category: Alonso-Mori R]]
 +
[[Category: Aydin O]]
 +
[[Category: Batyuk A]]
 +
[[Category: Bergmann U]]
 +
[[Category: Bhowmick A]]
 +
[[Category: Bogacz I]]
 +
[[Category: Brewster AS]]
 +
[[Category: Chatterjee R]]
 +
[[Category: Cheah MH]]
 +
[[Category: Chernev P]]
 +
[[Category: Dasgupta M]]
 +
[[Category: Dobbek H]]
 +
[[Category: Doyle MD]]
 +
[[Category: Fransson T]]
 +
[[Category: Fuller FD]]
 +
[[Category: Gatcke J]]
 +
[[Category: Gee LB]]
 +
[[Category: Haupt S]]
 +
[[Category: Holton JM]]
 +
[[Category: Hussein R]]
 +
[[Category: Ibrahim M]]
 +
[[Category: Kaminsky CJ]]
 +
[[Category: Keable SM]]
 +
[[Category: Kern J]]
 +
[[Category: Kim I-S]]
 +
[[Category: Makita H]]
 +
[[Category: Mamedov F]]
 +
[[Category: Messinger J]]
 +
[[Category: Moriarty NW]]
 +
[[Category: Nangca II]]
 +
[[Category: Owada S]]
 +
[[Category: Paley DW]]
 +
[[Category: Sauter NK]]
 +
[[Category: Simon PS]]
 +
[[Category: Tono K]]
 +
[[Category: Yachandra VK]]
 +
[[Category: Yano J]]
 +
[[Category: Zhang M]]
 +
[[Category: Zouni A]]

Revision as of 07:25, 22 March 2023

RT XFEL structure of the two-flash state of Photosystem II (2F, S3-rich) at 2.09 Angstrom resolution

PDB ID 8ez5

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools