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== Introduction ==
== Introduction ==
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Sodium-taurocholate Co-transporting Polypeptide (NTCP) is found within the membrane of [https://en.wikipedia.org/wiki/Hepatocyte hepatocyte], and its primary role is to facilitate the transport of [https://en.wikipedia.org/wiki/Bile_acid bile salts] into hepatocytes from the bloodstream. This is important because 90% of human bile salts are recycled daily, so the function of NTCP is critical in providing bile salts to solubilize fats for digestion. Bile salts are derived from [https://en.wikipedia.org/wiki/Cholesterol cholesterol], and they serve an important role in the mechanical digestion of fats and ultimately facilitate the chemical digestion of lipids. Their mixture of [https://en.wikipedia.org/wiki/Hydrophobe hydrophobic] and [https://en.wikipedia.org/wiki/Hydrophile hydrophilic] regions allow them to act as a bridge between aqueous and lipid environments. In the small intestine, bile salts [https://en.wikipedia.org/wiki/Emulsion emulsify] fats and cholesterol into [https://en.wikipedia.org/wiki/Micelle micelles]. Without bile, fats would spontaneously separate out of the aqueous mixture in the duodenum and would not be accessible to [https://en.wikipedia.org/wiki/Pancreatic_lipase_family#Human_pancreatic_lipase pancreatic lipase] to break down fat in your diet. Proper fat digestion requires both pancreatic lipase and bile, so the working transport of bile salts through NTCP in necessary to facilitate this action. In addition to transporting bile salts into the cytoplasm of hepatocytes, NTCP also serves as a receptor for [https://en.wikipedia.org/wiki/Hepatitis_B Hepatitis B (HBV)] and [https://en.wikipedia.org/wiki/Hepatitis_D Hepatitis D (HDV)] viruses.
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Sodium-taurocholate Co-transporting Polypeptide (NTCP) is found within the membrane of liver cells, and its primary role is to facilitate the transport of [https://en.wikipedia.org/wiki/Bile_acid bile salts] into liver cells from the bloodstream. This is important because 90% of human bile salts are recycled daily, so the function of NTCP is critical in providing bile salts to solubilize fats for digestion. In addition to transporting bile salts into the cytoplasm of hepatocytes, NTCP also serves as a receptor for [https://en.wikipedia.org/wiki/Hepatitis_B Hepatitis B (HBV)] and [https://en.wikipedia.org/wiki/Hepatitis_D Hepatitis D (HDV)] viruses. (Insert 2D picture from the powerpoint for basic mechanism of both bile salt and HBV)
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== Structure ==
== Structure ==
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Structures were determined by [https://en.wikipedia.org/wiki/Cryogenic_electron_microscopy cryogenic electron microscopy (Cryo-EM)] of NTCP in complex with antibodies or nanobodies, revealing two key conformations in NTCP's transport mechanism. There are nine [https://en.wikipedia.org/wiki/Alpha_helix alpha helices] spanning the membrane, with the [https://en.wikipedia.org/wiki/N-terminus N-terminus] located on the extracellular side of the plasma membrane and the [https://en.wikipedia.org/wiki/C-terminus C-terminus] located on the intracellular side. The panel domain is formed by transmembrane helices TM1, TM5, and TM6. The core domain is formed by the packing of a helix bundle consisting of TM2, TM3, and TM4 with another helix bundle consisting of TM7, TM8, and TM9. These two helix bundles are related by pseudo two-fold symmetry. Transmembrane helices are connected by short loops as well as extracellular and intracellular alpha helices that lie nearly parallel to the membrane.
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Structures were determined by [https://en.wikipedia.org/wiki/Cryogenic_electron_microscopy cryogenic electron microscopy (Cryo-EM)] of NTCP in complex with antibodies or nanobodies, revealing two key conformations in NTCP's transport mechanism. There are nine [https://en.wikipedia.org/wiki/Alpha_helix alpha helices] spanning the membrane, with the [https://en.wikipedia.org/wiki/N-terminus N-terminus] located on the extracellular side of the plasma membrane and the [https://en.wikipedia.org/wiki/C-terminus C-terminus] located on the intracellular side. Transmembrane helices are connected by short loops as well as extracellular and intracellular alpha helices that lie nearly parallel to the membrane.
=== Domains ===
=== Domains ===
NTCP contains two characteristic domains: the core and panel domains. Movement of these two domains allows recognition and transport of bile salts into hepatocytes.
NTCP contains two characteristic domains: the core and panel domains. Movement of these two domains allows recognition and transport of bile salts into hepatocytes.
*<b><font color="orange">Panel Domain</font></b>: 1-44, 155-208
*<b><font color="orange">Panel Domain</font></b>: 1-44, 155-208
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** Formed by transmembrane helices TM1, TM5, and TM6.
*<b><font color="#0040e0">Core domain</font></b>: 45-154, 209-309
*<b><font color="#0040e0">Core domain</font></b>: 45-154, 209-309
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**Formed by the packing of a helix bundle of TM2, TM3, and TM4 with another helix bundle of TM7, TM8, and TM9. These two helix bundles are related by pseudo two-fold symmetry.
=== Proline/Glycine Hinge ===
=== Proline/Glycine Hinge ===
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=== Sodium Binding Sites ===
=== Sodium Binding Sites ===
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To transport a single bile salt from the blood to the cytoplasm of the liver cell, two sodium ions are required to be bound to to NTCP in the open-pore state in association with specific residues of the molecule. This is because the transport of bile salts into the cell is so thermodynamically unfavorable , the reaction has to be coupled to the favorable transport of 2 sodium into into the cell. When the bile salts are released into the cell, the protein is then reverted to the inward facing conformation, in which the pore through which the bile salt had just passed is now closed. This is an example of secondary active transport. The residues interacting with the sodium ion in sodium binding site #1 includes S105, N106, E257, and T123. The residues interacting with the sodium ion in sodium binding site #2 includes Q261 and Q68. Mutations to these significant residues will inhibit the binding of sodium ions, and therefore, inhibit the overall function of NTCP.
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To transport a single bile salt from the blood to the cytoplasm of the liver cell, two sodium ions are required to be bound to to NTCP in the open-pore state. This is because the transport of bile salts into the cell is so thermodynamically unfavorable that the reaction has to be coupled to the favorable transport of two sodium into into the cell. It is thus an example of secondary active transport (INSERT BLUE LINK). When the bile salts are released into the cell, the protein is then found in the inward facing conformation, in which the pore through which the bile salt had just passed is now closed to the extracellular side. The residues interacting with the sodium ion in sodium binding site #1 include S105, N106, E257, and T123. The residues interacting with the sodium ion in sodium binding site #2 includes Q261 and Q68. Mutations to these significant residues inhibit the binding of sodium ions, and consequently, inhibit the transport of bile salts by NTCP.
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<scene name='95/952698/Sodium_binding_sites/2'>Sodium Binding Sites</scene> - (self note - split up the two sodium binding sites so we have two green links instead of one)
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<scene name='95/952698/Sodium_binding_sites/1'>TextToBeDisplayed</scene>
 
=== Significant Residues ===
=== Significant Residues ===
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The vast majority of residues involved in bile salt uptake are also involved in HBV/HDV infection. <scene name='95/952696/Residues_84-87_1/1'>Residues 84-87</scene> (extracellular view) of Human NTCP have been shown to be vital for preS1 domain recognition along with bile salt uptake. These residues were replaced in mouse NTCP by human NTCP and conferred to successful binding of the virus. These residues are found in the extracellular loop connecting TM2 and TM3. <scene name='95/952696/Residues_157-165/1'>Residues 157-165</scene> (extracellular view) have also been shown to be vital for preS1 recognition and bile salt uptake. These residues were mutated in monkey NTCP to the human residues and preS1 binding was then successful. These residues are found on the N-terminal end of TM5. The absence of residues in either of these <scene name='95/952696/Residues_84-87_and_157-165/1'>two extracellular patches</scene> hinders preS1 binding and therefore HBV/HDV infection. Interestingly, residues 84-87 do not affect bile acid uptake, so it is a potential site for blocking HBV/HDV infection while maintaining NTCP's ability to perform its normal function. Another important residue was discovered to be a [https://en.wikipedia.org/wiki/Single-nucleotide_polymorphism single-nucleotide polymorphism] in a small population in East Asia. <scene name='95/952696/Residue_267/1'>Residue 267</scene>, which is normally serine, being mutated to phenylalanine prevents preS1 binding and does not support bile acid transport. This residue is also found extracellularly, on TM8 of NTCP. There are 3 additional leucine residues that when mutated, block both preS1 binding and HBV/HDV infection. Replacing L27, L31, and L35 (INSERT GREEN LINK) with tryptophan residues presumably blocks the preS1 binding site preventing proper infection.
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The majority of residues involved in bile salt uptake are also involved in HBV/HDV infection. <scene name='95/952696/Residues_84-87_1/1'>Residues 84-87</scene> (extracellular view) of Human NTCP have been shown to be vital for HBV/HDV virus recognition along with bile salt uptake. These residues were replaced in mice NTCP by human NTCP and conferred to successful binding of the virus. These residues are found in the extracellular loop connecting TM2 and TM3. <scene name='95/952696/Residues_157-165/1'>Residues 157-165</scene> (extracellular view) have also been shown to be vital for HBV/HDV viral recognition and bile salt uptake. These residues were mutated in monkey NTCP to the human residues and preS1 binding was then successful. These residues are found on the N-terminal end of TM5. The absence of residues in either of these <scene name='95/952696/Residues_84-87_and_157-165/1'>two extracellular patches</scene> hinders preS1 binding and therefore HBV/HDV infection. Interestingly, residues 84-87 do not affect bile acid uptake, so it is a potential site for blocking HBV/HDV infection while maintaining NTCP's ability to perform its normal function. Another important residue was discovered to be a [https://en.wikipedia.org/wiki/Single-nucleotide_polymorphism single-nucleotide polymorphism] in a small population in East Asia. <scene name='95/952696/Residue_267/1'>Residue 267</scene>, which is normally serine, being mutated to phenylalanine prevents preS1 binding and does not support bile acid transport. This residue is also found extracellularly, on TM8 of NTCP. There are 3 additional leucine residues that when mutated, block both preS1 binding and HBV/HDV infection. Replacing L27, L31, and L35 (INSERT GREEN LINK) with tryptophan residues presumably blocks the preS1 binding site preventing proper infection.
== Function ==
== Function ==
=== Mechanism of Bile Salt Uptake ===
=== Mechanism of Bile Salt Uptake ===
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Bile salts recognize and bind to the <scene name='95/952697/Ntcp_open-pore_state_surface/1'>open-pore state</scene>. After binding, bile salts pass through the amphipathic pore (shown below) [[Image:Hydrophobicity pore.jpg|450 px|right|thumb|Hydrophobicity Scale PyMol picture of NTCP. Red represents hydrophobic residues and white represents hydrophilic residues.]] and NTCP transitions into the <scene name='95/952697/Ntcp_inward_facing_state/1'>inward facing state</scene>. In this conformation, the pore closes off relative to the extracellular side and opens to the cytoplasmic side. Transition to the inward facing state allows release of bile salts and sodium ions. It is not yet known how this transition exactly proceeds.
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Bile salts recognize and bind to the <scene name='95/952697/Ntcp_open-pore_state_surface/1'>open-pore state</scene>. After binding, bile salts pass through the amphipathic pore (INSERT GREEN LINK). and NTCP transitions into the <scene name='95/952697/Ntcp_inward_facing_state/1'>inward facing state</scene>. In this conformation, the pore closes off relative to the extracellular side and opens to the cytoplasmic side. Transition to the inward facing state allows release of bile salts and sodium ions. It is not yet known how this transition exactly proceeds.
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[[Image:Bile_Salt_Mechanism.png|450 px|right|thumb|Mechanism of Bile Salt Uptake by NTCP.]]
=== Mechanism of HBV/HDV Infection ===
=== Mechanism of HBV/HDV Infection ===
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== Medical Relevance ==
== Medical Relevance ==
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Bile salts are derived from [https://en.wikipedia.org/wiki/Cholesterol cholesterol], and they serve an important role in the mechanical digestion of fats and ultimately facilitate the chemical digestion of lipids. The amphipathicity (INSERT BLUE LINK) allows them to do this, solubilizing hydrophobic fats for transport in aqueous bodily fluids. Without bile salts, fats would spontaneously separate out of the aqueous solution in the duodenum and would not be accessible [https://en.wikipedia.org/wiki/Pancreatic_lipase_family#Human_pancreatic_lipase pancreatic lipase] for breakdown. Proper fat digestion requires both pancreatic lipase and bile; thus, NTCP's function in recycling bile salts is critical.
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Insight into NTCP's structure and function has implications for therapeutic treatment of HBV/HDV infection. For example, the inhibitory effect of Nb87 on myr-preS1 binding shows potential for therapeutics that stabilize NTCP inward-facing state as allosteric inhibitors of viral cell entry
</StructureSection>
</StructureSection>

Revision as of 22:39, 28 March 2023

Sodium-taurocholate Co-transporting Polypeptide

Sodium-taurocholate co-transporting Polypeptide (NTCP) 7PQQ

Drag the structure with the mouse to rotate

References

  1. Asami J, Kimura KT, Fujita-Fujiharu Y, Ishida H, Zhang Z, Nomura Y, Liu K, Uemura T, Sato Y, Ono M, Yamamoto M, Noda T, Shigematsu H, Drew D, Iwata S, Shimizu T, Nomura N, Ohto U. Structure of the bile acid transporter and HBV receptor NTCP. Nature. 2022 Jun; 606 (7916):1021-1026. DOI: 10.1038/s41586-022-04845-4.
  2. Goutam K, Ielasi FS, Pardon E, Steyaert J, Reyes N. Structural basis of sodium-dependent bile salt uptake into the liver. Nature. 2022 Jun;606(7916):1015-1020. DOI: 10.1038/s41586-022-04723-z.
  3. Park JH, Iwamoto M, Yun JH, Uchikubo-Kamo T, Son D, Jin Z, Yoshida H, Ohki M, Ishimoto N, Mizutani K, Oshima M, Muramatsu M, Wakita T, Shirouzu M, Liu K, Uemura T, Nomura N, Iwata S, Watashi K, Tame JRH, Nishizawa T, Lee W, Park SY. Structural insights into the HBV receptor and bile acid transporter NTCP. Nature. 2022 Jun;606(7916):1027-1031. DOI: 10.1038/s41586-022-04857-0.
  4. Liu H, Irobalieva RN, Bang-Sørensen R, Nosol K, Mukherjee S, Agrawal P, Stieger B, Kossiakoff AA, Locher KP. Structure of human NTCP reveals the basis of recognition and sodium-driven transport of bile salts into the liver. Cell Res. 2022 Aug;32(8):773-776. DOI: 10.1038/s41422-022-00680-4.
  5. Qi X, Li W. Unlocking the secrets to human NTCP structure. Innovation (Camb). 2022 Aug 1;3(5):100294. doi: 10.1016/j.xinn.2022.100294. DOI: 10.1016/j.xinn.2022.100294.
  6. Zhang X, Zhang Q, Peng Q, Zhou J, Liao L, Sun X, Zhang L, Gong T. Hepatitis B virus preS1-derived lipopeptide functionalized liposomes for targeting of hepatic cells. Biomaterials. 2014 Jul;35(23):6130-41. doi: 10.1016/j.biomaterials.2014.04.037. DOI: 10.1016/j.biomaterials.2014.04.037.

Student Contributors

  • Ben Minor
  • Maggie Samm
  • Zac Stanley
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