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| <StructureSection load='4v2k' size='340' side='right'caption='[[4v2k]], [[Resolution|resolution]] 1.29Å' scene=''> | | <StructureSection load='4v2k' size='340' side='right'caption='[[4v2k]], [[Resolution|resolution]] 1.29Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[4v2k]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_vinosus"_(ehrenberg_1838)_trevisan_1889 "bacillus vinosus" (ehrenberg 1838) trevisan 1889]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4V2K OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4V2K FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4v2k]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Allochromatium_vinosum Allochromatium vinosum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4V2K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4V2K FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=THJ:THIOSULFATE'>THJ</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CSS:S-MERCAPTOCYSTEINE'>CSS</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=THJ:THIOSULFATE'>THJ</scene></td></tr> |
- | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CSS:S-MERCAPTOCYSTEINE'>CSS</scene></td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4v2k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4v2k OCA], [https://pdbe.org/4v2k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4v2k RCSB], [https://www.ebi.ac.uk/pdbsum/4v2k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4v2k ProSAT]</span></td></tr> |
- | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Thiosulfate_dehydrogenase Thiosulfate dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.8.2.2 1.8.2.2] </span></td></tr>
| + | |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4v2k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4v2k OCA], [http://pdbe.org/4v2k PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4v2k RCSB], [http://www.ebi.ac.uk/pdbsum/4v2k PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4v2k ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| == Function == | | == Function == |
- | [[http://www.uniprot.org/uniprot/TSDA_ALLVD TSDA_ALLVD]] Catalyzes the oxidation of 2 molecules of thiosulfate to tetrathionate.<ref>PMID:16995898</ref> <ref>PMID:22779704</ref> | + | [https://www.uniprot.org/uniprot/TSDA_ALLVD TSDA_ALLVD] Catalyzes the oxidation of 2 molecules of thiosulfate to tetrathionate.<ref>PMID:16995898</ref> <ref>PMID:22779704</ref> |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
| + | [[Category: Allochromatium vinosum]] |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Thiosulfate dehydrogenase]]
| + | [[Category: Berks BC]] |
- | [[Category: Berks, B C]] | + | [[Category: Chappell PE]] |
- | [[Category: Chappell, P E]] | + | [[Category: Eisel B]] |
- | [[Category: Eisel, B]] | + | [[Category: Grabarczyk DB]] |
- | [[Category: Grabarczyk, D B]] | + | [[Category: Johnson S]] |
- | [[Category: Johnson, S]] | + | [[Category: Lea SM]] |
- | [[Category: Lea, S M]] | + | |
- | [[Category: Cysteine modification]]
| + | |
- | [[Category: Cytochrome c]]
| + | |
- | [[Category: Disulfide formation]]
| + | |
- | [[Category: His/cys heme]]
| + | |
- | [[Category: Oxidoreductase]]
| + | |
| Structural highlights
Function
TSDA_ALLVD Catalyzes the oxidation of 2 molecules of thiosulfate to tetrathionate.[1] [2]
Publication Abstract from PubMed
Thiosulfate dehydrogenase (TsdA) catalyzes the oxidation of two thiosulfate molecules to form tetrathionate and is predicted to use an unusual cysteine-ligated heme as the catalytic cofactor. We have determined the structure of Allochromatium vinosum TsdA to a resolution of 1.3 A. This structure confirms the active site heme ligation, identifies a thiosulfate binding site within the active site cavity, and reveals an electron transfer route from the catalytic heme, through a second heme group to the external electron acceptor. We provide multiple lines of evidence that the catalytic reaction proceeds through the intermediate formation of a S-thiosulfonate derivative of the heme cysteine ligand: the cysteine is reactive and is accessible to electrophilic attack; cysteine S-thiosulfonate is formed by the addition of thiosulfate or following the reverse reaction with tetrathionate; the S-thiosulfonate modification is removed through catalysis; and alkylating the cysteine blocks activity. Active site amino acid residues required for catalysis were identified by mutagenesis and are inferred to also play a role in stabilizing the S-thiosulfonate intermediate. The enzyme SoxAX, which catalyzes the first step in the bacterial Sox thiosulfate oxidation pathway, is homologous to TsdA and can be inferred to use a related catalytic mechanism.
Mechanism of thiosulfate oxidation in the SoxA family of cysteine-ligated cytochromes.,Grabarczyk DB, Chappell PE, Eisel B, Johnson S, Lea SM, Berks BC J Biol Chem. 2015 Apr 3;290(14):9209-21. doi: 10.1074/jbc.M114.618025. Epub 2015 , Feb 11. PMID:25673696[3]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Hensen D, Sperling D, Truper HG, Brune DC, Dahl C. Thiosulphate oxidation in the phototrophic sulphur bacterium Allochromatium vinosum. Mol Microbiol. 2006 Nov;62(3):794-810. Epub 2006 Sep 21. PMID:16995898 doi:http://dx.doi.org/10.1111/j.1365-2958.2006.05408.x
- ↑ Denkmann K, Grein F, Zigann R, Siemen A, Bergmann J, van Helmont S, Nicolai A, Pereira IA, Dahl C. Thiosulfate dehydrogenase: a widespread unusual acidophilic c-type cytochrome. Environ Microbiol. 2012 Oct;14(10):2673-88. doi:, 10.1111/j.1462-2920.2012.02820.x. Epub 2012 Jul 11. PMID:22779704 doi:http://dx.doi.org/10.1111/j.1462-2920.2012.02820.x
- ↑ Grabarczyk DB, Chappell PE, Eisel B, Johnson S, Lea SM, Berks BC. Mechanism of thiosulfate oxidation in the SoxA family of cysteine-ligated cytochromes. J Biol Chem. 2015 Apr 3;290(14):9209-21. doi: 10.1074/jbc.M114.618025. Epub 2015 , Feb 11. PMID:25673696 doi:http://dx.doi.org/10.1074/jbc.M114.618025
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