Sandbox Reserved 1769
From Proteopedia
(Difference between revisions)
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=== Domains === | === Domains === | ||
NTCP contains <scene name='95/952697/Ntcp_open-pore_state/21'>two characteristic domains</scene>: the core and panel domains (Figure 3). Movement of these two domains allows recognition and transport of bile acids into hepatocytes. | NTCP contains <scene name='95/952697/Ntcp_open-pore_state/21'>two characteristic domains</scene>: the core and panel domains (Figure 3). Movement of these two domains allows recognition and transport of bile acids into hepatocytes. | ||
- | *<b><font color="orange">Panel Domain</font></b>: <scene name='95/952697/Ntcp_open-pore_state/ | + | *<b><font color="orange">Panel Domain</font></b>: <scene name='95/952697/Ntcp_open-pore_state/23'>Residues 1-44, 155-208</scene> |
** Formed by transmembrane helices TM1, TM5, and TM6. | ** Formed by transmembrane helices TM1, TM5, and TM6. | ||
- | *<b><font color="#0040e0">Core domain</font></b>: <scene name='95/952697/Ntcp_open-pore_state/ | + | *<b><font color="#0040e0">Core domain</font></b>: <scene name='95/952697/Ntcp_open-pore_state/24'>Residues 45-154, 209-309</scene> |
**Formed by the packing of a helix bundle of <b><font color="blue">TM2, TM3, and TM4</font></b> with another helix bundle of <b><font color="skyblue">TM7, TM8, and TM9</font></b>. These two helix bundles are related by pseudo two-fold symmetry.<Ref name="Qi"> Qi X, Li W. Unlocking the secrets to human NTCP structure. Innovation (Camb). 2022 Aug 1;3(5):100294. [https://dx.doi.org/10.1016/j.xinn.2022.100294 DOI: 10.1016/j.xinn.2022.100294]. </Ref> | **Formed by the packing of a helix bundle of <b><font color="blue">TM2, TM3, and TM4</font></b> with another helix bundle of <b><font color="skyblue">TM7, TM8, and TM9</font></b>. These two helix bundles are related by pseudo two-fold symmetry.<Ref name="Qi"> Qi X, Li W. Unlocking the secrets to human NTCP structure. Innovation (Camb). 2022 Aug 1;3(5):100294. [https://dx.doi.org/10.1016/j.xinn.2022.100294 DOI: 10.1016/j.xinn.2022.100294]. </Ref> | ||
=== Proline/Glycine Hinge === | === Proline/Glycine Hinge === | ||
- | <scene name='95/952697/Ntcp_open-pore_state/ | + | <scene name='95/952697/Ntcp_open-pore_state/25'>Glycine and proline residues</scene> in the connecting loops and extra- and intracellular helices (Figure 3) act as hinges in the mechanism of bile salt uptake. This flexibility allows separation of the core and panel domains, creating a pore open to the extracellular space and exposing critical Na+ binding sites. Once substrate binds the open-pore state, this hinge allows the transition to close this pore relative to the extracellular side and open to the cytoplasmic side, thus allowing release of substrate into the cell.<ref name = "Goutam" /> |
=== Sodium Binding Sites === | === Sodium Binding Sites === |
Revision as of 17:12, 3 April 2023
Sodium-taurocholate Co-transporting Polypeptide
|
References
- ↑ 1.0 1.1 1.2 1.3 Goutam K, Ielasi FS, Pardon E, Steyaert J, Reyes N. Structural basis of sodium-dependent bile salt uptake into the liver. Nature. 2022 Jun;606(7916):1015-1020. DOI: 10.1038/s41586-022-04723-z.
- ↑ 2.0 2.1 2.2 2.3 Asami J, Kimura KT, Fujita-Fujiharu Y, Ishida H, Zhang Z, Nomura Y, Liu K, Uemura T, Sato Y, Ono M, Yamamoto M, Noda T, Shigematsu H, Drew D, Iwata S, Shimizu T, Nomura N, Ohto U. Structure of the bile acid transporter and HBV receptor NTCP. Nature. 2022 Jun; 606 (7916):1021-1026. DOI: 10.1038/s41586-022-04845-4.
- ↑ Cite error: Invalid
<ref>
tag; no text was provided for refs namedPark
- ↑ 4.0 4.1 4.2 Liu H, Irobalieva RN, Bang-Sørensen R, Nosol K, Mukherjee S, Agrawal P, Stieger B, Kossiakoff AA, Locher KP. Structure of human NTCP reveals the basis of recognition and sodium-driven transport of bile salts into the liver. Cell Res. 2022 Aug;32(8):773-776. DOI: 10.1038/s41422-022-00680-4.
- ↑ Qi X, Li W. Unlocking the secrets to human NTCP structure. Innovation (Camb). 2022 Aug 1;3(5):100294. DOI: 10.1016/j.xinn.2022.100294.
- ↑ 6.0 6.1 Zhang X, Zhang Q, Peng Q, Zhou J, Liao L, Sun X, Zhang L, Gong T. Hepatitis B virus preS1-derived lipopeptide functionalized liposomes for targeting of hepatic cells. Biomaterials. 2014 Jul;35(23):6130-41. DOI: 10.1016/j.biomaterials.2014.04.037.
- ↑ Patton JS, Carey MC. Watching fat digestion. Science. 1979 Apr 13;204(4389):145-8. DOI: 10.1126/science.432636.
- ↑ Donkers JM, Kooijman S, Slijepcevic D, Kunst RF, Roscam Abbing RL, Haazen L, de Waart DR, Levels JH, Schoonjans K, Rensen PC, Oude Elferink RP, van de Graaf SF. NTCP deficiency in mice protects against obesity and hepatosteatosis. JCI Insight. 2019 Jun 25;5(14):e127197. DOI: 10.1172/jci.insight.127197.
Student Contributors
- Ben Minor
- Maggie Samm
- Zac Stanley