This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


Sandbox Reserved 1793

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 22: Line 22:
==== Bile Salt ====
==== Bile Salt ====
-
The <scene name='95/952721/Amphipathic_patterns/1'>amphipathic pore</scene> is also characteristic of NTCP. The pore surface remains {{Template:ColorKey_Hydrophobic}}, while lining of the open pore state is largely {{Template:ColorKey_Polar}}. This pattern is believed to follow similar amphipathic patterns within taurocholate and other NTCP substrates, such as steroids and statins. <ref name="Goutam"/> Thus the channel provides specificity while preventing leakage of other substrates. When observing the relevant <scene name='95/952721/Bile_salts_res/3'>bile salt binding residues</scene> it is shown that some residues form Van der Waals interactions while others will form dipole-dipole or ionic interactions with bile salt substrates. The core domain appears to contribute most of the polar domains, while the panel domain contributes more hydrophobic residues.
+
The <scene name='95/952721/Amphipathic_patterns/1'>amphipathic pore</scene> is also characteristic of NTCP. The pore surface remains {{Template:ColorKey_Hydrophobic}}, while lining of the open pore state is largely {{Template:ColorKey_Polar}}. This pattern is believed to follow similar amphipathic patterns within taurocholate and other NTCP substrates, such as steroids or hormones <Ref name = "Qi"> Xiangbing Qi, Wenhui Li, Unlocking the secrets to human NTCP structure, The Innovation, Volume 3,Issue 5,2022,100294,ISSN 2666-6758, https://doi.org/10.1016/j.xinn.2022.100294.
 +
(https://www.sciencedirect.com/science/article/pii/S266667582200090X) </ref> Thus the channel provides specificity while preventing leakage of other substrates. When observing the relevant <scene name='95/952721/Bile_salts_res/3'>bile salt binding residues</scene> it is shown that some residues form Van der Waals interactions while others will form dipole-dipole or ionic interactions with bile salt substrates. The core domain appears to contribute most of the polar domains, while the panel domain contributes more hydrophobic residues.
=== Conformational Change ===
=== Conformational Change ===
Line 31: Line 32:
== Bile Salt Transport ==
== Bile Salt Transport ==
-
<Ref name = "Liu"> Liu, H., Irobalieva, R.N., Bang-Sørensen, R. et al. Structure of human NTCP reveals the basis of recognition and sodium-driven transport of bile salts into the liver. Cell Res 32, 773–776 (2022). https://doi.org/10.1038/s41422-022-00680-4 </Ref>
+
A proposed pathway for NTCP bile salt transport suggests that both sodium ions are translocated with the transport of one bile salt.<Ref name = "Liu"> Liu, H., Irobalieva, R.N., Bang-Sørensen, R. et al. Structure of human NTCP reveals the basis of recognition and sodium-driven transport of bile salts into the liver. Cell Res 32, 773–776 (2022). https://doi.org/10.1038/s41422-022-00680-4 </Ref> In this mechanism both sodium ions are released along with the inner bile salt into the cytoplasm (Fig. 5). The outermost bile salt remains bound however in the pore, likely helping to prevent leakage <Ref name = "Liu"> The movement of sodium ions then facilitates the conformational change to the inward-facing, pore inaccessible conformation that is believed to displace the outer bile salt into the inner bile salt placement (Fig. 5). </Ref name = "Liu"> Sodium ion then bind to NTCP, favoring the open-pore state and also allowing for the binding of another outer bile salt (Fig 5). The process can then start again releasing the next inner bile salt with the translocation of the sodium ions into the cytoplasm.
== Medical Relevancy ==
== Medical Relevancy ==

Revision as of 17:50, 3 April 2023

This Sandbox is Reserved from February 27 through August 31, 2023 for use in the course CH462 Biochemistry II taught by R. Jeremy Johnson at the Butler University, Indianapolis, USA. This reservation includes Sandbox Reserved 1765 through Sandbox Reserved 1795.
To get started:
  • Click the edit this page tab at the top. Save the page after each step, then edit it again.
  • show the Scene authoring tools, create a molecular scene, and save it. Copy the green link into the page.
  • Add a description of your scene. Use the buttons above the wikitext box for bold, italics, links, headlines, etc.

More help: Help:Editing

Sodium Bile Salt Co-Transporting Protein

Drag the structure with the mouse to rotate

References

  1. Stieger B. The role of the sodium-taurocholate cotransporting polypeptide (NTCP) and of the bile salt export pump (BSEP) in physiology and pathophysiology of bile formation. Handb Exp Pharmacol. 2011;(201):205-59. doi: 10.1007/978-3-642-14541-4_5. PMID: 21103971. DOI: DOI: 10.1007/978-3-642-14541-4_5.
  2. Anwer MS, Stieger B. Sodium-dependent bile salt transporters of the SLC10A transporter family: more than solute transporters. Pflugers Arch. 2014 Jan;466(1):77-89. PMID:24196564 doi:10.1007/s00424-013-1367-0
  3. Park, JH., Iwamoto, M., Yun, JH. et al. Structural insights into the HBV receptor and bile acid transporter NTCP. Nature 606, 1027–1031 (2022). https://doi.org/10.1038/s41586-022-04857-0.
  4. 4.0 4.1 Goutam, K., Ielasi, F.S., Pardon, E. et al. Structural basis of sodium-dependent bile salt uptake into the liver. Nature 606, 1015–1020 (2022). DOI: 10.1038/s41586-022-04723-z.
  5. Xiangbing Qi, Wenhui Li, Unlocking the secrets to human NTCP structure, The Innovation, Volume 3,Issue 5,2022,100294,ISSN 2666-6758, https://doi.org/10.1016/j.xinn.2022.100294. (https://www.sciencedirect.com/science/article/pii/S266667582200090X)
  6. 6.0 6.1 Liu, H., Irobalieva, R.N., Bang-Sørensen, R. et al. Structure of human NTCP reveals the basis of recognition and sodium-driven transport of bile salts into the liver. Cell Res 32, 773–776 (2022). https://doi.org/10.1038/s41422-022-00680-4
Personal tools