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| <StructureSection load='4w9s' size='340' side='right'caption='[[4w9s]], [[Resolution|resolution]] 1.80Å' scene=''> | | <StructureSection load='4w9s' size='340' side='right'caption='[[4w9s]], [[Resolution|resolution]] 1.80Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[4w9s]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/I80a6 I80a6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4W9S OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4W9S FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4w9s]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Influenza_A_virus_(A/duck/Hokkaido/8/1980(H3N8)) Influenza A virus (A/duck/Hokkaido/8/1980(H3N8))]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4W9S OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4W9S FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=3K1:5-HYDROXY-2-[4-(1H-TETRAZOL-5-YL)PHENYL]PYRIMIDIN-4(3H)-ONE'>3K1</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=3K1:5-HYDROXY-2-[4-(1H-TETRAZOL-5-YL)PHENYL]PYRIMIDIN-4(3H)-ONE'>3K1</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4m5u|4m5u]], [[4mk1|4mk1]], [[4mk2|4mk2]], [[4mk5|4mk5]], [[4ln7|4ln7]], [[4m4q|4m4q]], [[4m5o|4m5o]], [[4m5q|4m5q]], [[4m5r|4m5r]]</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4w9s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4w9s OCA], [https://pdbe.org/4w9s PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4w9s RCSB], [https://www.ebi.ac.uk/pdbsum/4w9s PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4w9s ProSAT]</span></td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=387207 I80A6])</td></tr>
| + | |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4w9s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4w9s OCA], [http://pdbe.org/4w9s PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4w9s RCSB], [http://www.ebi.ac.uk/pdbsum/4w9s PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4w9s ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| == Function == | | == Function == |
- | [[http://www.uniprot.org/uniprot/PA_I80A6 PA_I80A6]] Implicated in endonuclease cleavage of capped RNA primers. Displays an elongation factor activity in viral RNA synthesis. Dispensable for viral transcription, but not replication. | + | [https://www.uniprot.org/uniprot/PA_I80A6 PA_I80A6] Implicated in endonuclease cleavage of capped RNA primers. Displays an elongation factor activity in viral RNA synthesis. Dispensable for viral transcription, but not replication. |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | | |
| ==See Also== | | ==See Also== |
- | *[[RNA polymerase|RNA polymerase]] | + | *[[RNA polymerase 3D structures|RNA polymerase 3D structures]] |
| == References == | | == References == |
| <references/> | | <references/> |
| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: I80a6]] | |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Arnold, E]] | + | [[Category: Arnold E]] |
- | [[Category: Bauman, J D]] | + | [[Category: Bauman JD]] |
- | [[Category: Das, K]] | + | [[Category: Das K]] |
- | [[Category: Patel, D]] | + | [[Category: Patel D]] |
- | [[Category: Cap-snatching]]
| + | |
- | [[Category: Rna binding protein]]
| + | |
- | [[Category: Rna binding protein-inhibitor complex]]
| + | |
- | [[Category: Transcription-transcription inhibitor complex]]
| + | |
| Structural highlights
Function
PA_I80A6 Implicated in endonuclease cleavage of capped RNA primers. Displays an elongation factor activity in viral RNA synthesis. Dispensable for viral transcription, but not replication.
Publication Abstract from PubMed
Seasonal and pandemic influenza outbreaks remain a major human health problem. Inhibition of the endonuclease activity of influenza RNA-dependent RNA polymerase is attractive for the development of new agents for the treatment of influenza infection. Our earlier studies identified a series of 5- and 6-phenyl substituted 3-hydroxypyridin-2(1H)-ones that were effective inhibitors of influenza endonuclease. These agents identified as bimetal chelating ligands binding to the active site of the enzyme. In the present study, several aza analogues of these phenyl substituted 3-hydroxypyridin-2(1H)-one compounds were synthesized and evaluated for their ability to inhibit the endonuclease activity. In contrast to the 4-aza analogue of 6-(4-fluorophenyl)-3-hydroxypyridin-2(1H)-one, the 5-aza analogue (5-hydroxy-2-(4-fluorophenyl)pyrimidin-4(3H)-one) did exhibit significant activity as an endonuclease inhibitor. The 6-aza analogue of 5-(4-fluorophenyl)-3-hydroxypyridin-2(1H)-one (6-(4-fluorophenyl)-4-hydroxypyridazin-3(2H)-one) also retained modest activity as an inhibitor. Several varied 6-phenyl-4-hydroxypyridazin-3(2H)-ones and 2-phenyl-5-hydroxypyrimidin-4(3H)-ones were synthesized and evaluated as endonuclease inhibitors. The SAR observed for these aza analogues are consistent with those previously observed with various phenyl substituted 3-hydroxypyridin-2(1H)-ones.
Phenyl Substituted 4-Hydroxypyridazin-3(2H)-ones and 5-Hydroxypyrimidin-4(3H)-ones: Inhibitors of Influenza A Endonuclease.,Sagong HY, Bauman JD, Patel D, Das K, Arnold E, LaVoie EJ J Med Chem. 2014 Sep 29. PMID:25225968[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Sagong HY, Bauman JD, Patel D, Das K, Arnold E, LaVoie EJ. Phenyl Substituted 4-Hydroxypyridazin-3(2H)-ones and 5-Hydroxypyrimidin-4(3H)-ones: Inhibitors of Influenza A Endonuclease. J Med Chem. 2014 Sep 29. PMID:25225968 doi:http://dx.doi.org/10.1021/jm500958x
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