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| <StructureSection load='4wnr' size='340' side='right'caption='[[4wnr]], [[Resolution|resolution]] 2.90Å' scene=''> | | <StructureSection load='4wnr' size='340' side='right'caption='[[4wnr]], [[Resolution|resolution]] 2.90Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[4wnr]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Metbf Metbf]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4WNR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4WNR FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4wnr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanosarcina_barkeri_str._Fusaro Methanosarcina barkeri str. Fusaro]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4WNR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4WNR FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Mbar_A2306 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=269797 METBF])</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4wnr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4wnr OCA], [https://pdbe.org/4wnr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4wnr RCSB], [https://www.ebi.ac.uk/pdbsum/4wnr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4wnr ProSAT]</span></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4wnr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4wnr OCA], [http://pdbe.org/4wnr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4wnr RCSB], [http://www.ebi.ac.uk/pdbsum/4wnr PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4wnr ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/Q46A62_METBF Q46A62_METBF] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| </StructureSection> | | </StructureSection> |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Metbf]] | + | [[Category: Methanosarcina barkeri str. Fusaro]] |
- | [[Category: Terheyden, S]] | + | [[Category: Terheyden S]] |
- | [[Category: Cor]]
| + | |
- | [[Category: Gad]]
| + | |
- | [[Category: Parkinson's disease]]
| + | |
- | [[Category: Roco protein]]
| + | |
- | [[Category: Signaling protein]]
| + | |
- | [[Category: Small g-protein]]
| + | |
| Structural highlights
Function
Q46A62_METBF
Publication Abstract from PubMed
Mutations in leucine-rich-repeat kinase 2 (LRRK2) are the most frequent cause of late-onset Parkinson's disease (PD). LRRK2 belongs to the Roco family of proteins which share a conserved Ras-like G domain (Roc) and a C-terminal of Roc domain (COR) tandem. The nucleotide state of small G proteins is strictly controlled by Guanine nucleotide Exchange Factors (GEFs) and GTPase activating proteins (GAPs). Because of contradictory structural and biochemical data, the regulatory mechanism of the LRRK2 Roc G-domain and the RocCOR tandem is still under debate. Here we present the first nucleotide bound Roc structure and used LRRK2 and bacterial Roco proteins to characterize the RocCOR function in more detail. Nucleotide binding induces a drastic structural change in the Roc-COR domain interface, a region strongly implicated in LRRK2 patient mutations. Our data confirm previous assumptions that the C-terminal sub-domain of COR functions as a dimerization device. We show that dimer formation is independent of nucleotide. The affinity for GDP/GTP is in the micromolar range, the results of which are fast dissociation rates in the s-1 range. Thus, Roco proteins are unlikely in need of GEFs to achieve activation. Monomeric LRRK2 and Roco G-domains have a similar low GTPase activity as small G proteins. We show that GTPase activity in bacterial Roco is stimulated by nucleotide dependent dimerization of the G-domain within the complex. We thus propose that Roco proteins don't require GAPs to stimulate GTP hydrolysis but stimulate each other by one monomer completing the catalytic machinery of the other.
Revisiting the Roco G protein cycle.,Terheyden S, Ho FY, Gilsbach BK, Wittinghofer A, Kortholt A Biochem J. 2014 Oct 15. PMID:25317655[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Terheyden S, Ho FY, Gilsbach BK, Wittinghofer A, Kortholt A. Revisiting the Roco G protein cycle. Biochem J. 2014 Oct 15. PMID:25317655 doi:http://dx.doi.org/10.1042/BJ20141095
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