2rvb
From Proteopedia
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==Solution structure of the complex between XPC acidic domain and TFIIH p62 PH domain== | ==Solution structure of the complex between XPC acidic domain and TFIIH p62 PH domain== | ||
| - | <StructureSection load='2rvb' size='340' side='right'caption='[[2rvb | + | <StructureSection load='2rvb' size='340' side='right'caption='[[2rvb]]' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[2rvb]] is a 2 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RVB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RVB FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[2rvb]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RVB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RVB FirstGlance]. <br> |
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rvb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rvb OCA], [https://pdbe.org/2rvb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rvb RCSB], [https://www.ebi.ac.uk/pdbsum/2rvb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rvb ProSAT]</span></td></tr> | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rvb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rvb OCA], [https://pdbe.org/2rvb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rvb RCSB], [https://www.ebi.ac.uk/pdbsum/2rvb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rvb ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Disease == | == Disease == | ||
| - | + | [https://www.uniprot.org/uniprot/XPC_HUMAN XPC_HUMAN] Defects in XPC are a cause of xeroderma pigmentosum complementation group C (XP-C) [MIM:[https://omim.org/entry/278720 278720]; also known as xeroderma pigmentosum III (XP3). XP-C is a rare human autosomal recessive disease characterized by solar sensitivity, high predisposition for developing cancers on areas exposed to sunlight and, in some cases, neurological abnormalities.<ref>PMID:19609301</ref> <ref>PMID:17682058</ref> <ref>PMID:17355181</ref> <ref>PMID:8298653</ref> <ref>PMID:10766188</ref> | |
== Function == | == Function == | ||
| - | + | [https://www.uniprot.org/uniprot/XPC_HUMAN XPC_HUMAN] Involved in global genome nucleotide excision repair (GG-NER) by acting as damage sensing and DNA-binding factor component of the XPC complex. Has only a low DNA repair activity by itself which is stimulated by RAD23B and RAD23A. Has a preference to bind DNA containing a short single-stranded segment but not to damaged oligonucleotides. This feature is proposed to be related to a dynamic sensor function: XPC can rapidly screen duplex DNA for non-hydrogen-bonded bases by forming a transient nucleoprotein intermediate complex which matures into a stable recognition complex through an intrinsic single-stranded DNA-binding activity.<ref>PMID:9734359</ref> <ref>PMID:10734143</ref> <ref>PMID:10873465</ref> <ref>PMID:12509299</ref> <ref>PMID:12547395</ref> <ref>PMID:19609301</ref> <ref>PMID:19941824</ref> <ref>PMID:20649465</ref> <ref>PMID:20028083</ref> <ref>PMID:20798892</ref> The XPC complex is proposed to represent the first factor bound at the sites of DNA damage and together with other core recognition factors, XPA, RPA and the TFIIH complex, is part of the pre-incision (or initial recognition) complex. The XPC complex recognizes a wide spectrum of damaged DNA characterized by distortions of the DNA helix such as single-stranded loops, mismatched bubbles or single stranded overhangs. The orientation of XPC complex binding appears to be crucial for inducing a productive NER. XPC complex is proposed to recognize and to interact with unpaired bases on the undamaged DNA strand which is followed by recruitment of the TFIIH complex and subsequent scanning for lesions in the opposite strand in a 5'-to-3' direction by the NER machinery. Cyclobutane pyrimidine dimers (CPDs) which are formed upon UV-induced DNA damage esacpe detection by the XPC complex due to a low degree of structural perurbation. Instead they are detected by the UV-DDB complex which in turn recruits and cooperates with the XPC complex in the respective DNA repair. In vitro, the XPC:RAD23B dimer is sufficient to initiate NER; it preferentially binds to cisplatin and UV-damaged double-stranded DNA and also binds to a variety of chemically and structurally diverse DNA adducts. XPC:RAD23B contacts DNA both 5' and 3' of a cisplatin lesion with a preference for the 5' side. XPC:RAD23B induces a bend in DNA upon binding. XPC:RAD23B stimulates the activity of DNA glycosylases TDG and SMUG1.<ref>PMID:9734359</ref> <ref>PMID:10734143</ref> <ref>PMID:10873465</ref> <ref>PMID:12509299</ref> <ref>PMID:12547395</ref> <ref>PMID:19609301</ref> <ref>PMID:19941824</ref> <ref>PMID:20649465</ref> <ref>PMID:20028083</ref> <ref>PMID:20798892</ref> | |
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
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__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| + | [[Category: Homo sapiens]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: Nishimura | + | [[Category: Nishimura Y]] |
| - | [[Category: Okuda | + | [[Category: Okuda M]] |
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Revision as of 20:53, 12 April 2023
Solution structure of the complex between XPC acidic domain and TFIIH p62 PH domain
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