Sandbox Reserved 1768
From Proteopedia
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=== Sodium Binding Sites === | === Sodium Binding Sites === | ||
- | To transport a single bile salt from the blood to the cytoplasm of the hepatocyte, <scene name='95/952697/Bothnabindingsites/4'>two sodium ions</scene> must bind to NTCP in the open-pore state, using two <scene name='95/952697/Bothnabindingsites/ | + | To transport a single bile salt from the blood to the cytoplasm of the hepatocyte, <scene name='95/952697/Bothnabindingsites/4'>two sodium ions</scene> must bind to NTCP in the open-pore state, using two <scene name='95/952697/Bothnabindingsites/7'>sodium binding sites</scene>.<Ref name="Liu"> Liu H, Irobalieva RN, Bang-Sørensen R, Nosol K, Mukherjee S, Agrawal P, Stieger B, Kossiakoff AA, Locher KP. Structure of human NTCP reveals the basis of recognition and sodium-driven transport of bile salts into the liver. Cell Res. 2022 Aug;32(8):773-776. [https://dx.doi.org/10.1038/s41422-022-00680-4 DOI: 10.1038/s41422-022-00680-4]. </Ref> The residues in the <scene name='95/952697/Ntcp_complex_sodiumsites/14'>first sodium binding site</scene> include S105, N106, T123, and E257. The residues in the <scene name='95/952697/Ntcp_complex_sodiumsites/13'>second sodium binding site</scene> include Q68 and Q261. Mutations to these significant residues inhibit the binding of sodium ions, and consequently, inhibit the transport of bile salts by NTCP.<ref name = "Liu" /> [https://en.wikipedia.org/wiki/Active_transport#Secondary_active_transport Secondary active transport] is used, as the transport of bile acids into the cell is thermodynamically unfavorable, but is coupled with the favorable transport of two sodium into into the cell to make the overall process thermodynamically favorable.<ref name = "Goutam" /> When the bile salts are released into the cell, NTCP transitions to the <scene name='95/952697/Ntcp_inward_facing_state/3'>inward facing state</scene>, where the pore is now closed to the extracellular side. |
== Function == | == Function == | ||
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=== Mechanism of Bile Salt Uptake === | === Mechanism of Bile Salt Uptake === | ||
[[Image:ntcpmechanismoverall.png|350 px|right|thumb| Figure 4. Mechanism of bile salt uptake by NTCP. A bile salt and two Na+ ions bind to NTCP in the open-pore state. Transition to the inward-facing state allows release of the bile salt and ions into the cytoplasm.]] | [[Image:ntcpmechanismoverall.png|350 px|right|thumb| Figure 4. Mechanism of bile salt uptake by NTCP. A bile salt and two Na+ ions bind to NTCP in the open-pore state. Transition to the inward-facing state allows release of the bile salt and ions into the cytoplasm.]] | ||
- | NTCP utilizes secondary active transport to uptake bile salts from blood plasma into the cytoplasm of liver cells (Figure 4). The transport of one bile salt is driven by the downhill transport of 2 Na+ ions along sodium’s electrochemical gradient. Two bile salts and two Na+ ions bind to the <scene name='95/952697/Ntcp_open-pore_state_surface/4'>open-pore state</scene> (Figure 4a), but only one bile salt (along with two Na+ ions) is released into the cytoplasm.<ref name="Liu" /> After all substrates are bound, the conformational change from the open-pore state to the inward facing state is driven by the energetics of the favorable transport of Na+ ions.<ref name="Liu" /> The <scene name='95/952697/Ntcp_inward_facing_state/3'>inward facing state</scene> (Figure 4b) allows release of one bile salt and two Na+ ions into the cytoplasm. In this conformation, the pore closes off relative to the extracellular side and opens to the cytoplasmic side.<ref name="Asami" /> Afterwards, the remaining bile salt bound to NTCP shifts to the position the previous bile salt occupied, and the process repeats itself.<ref name = "Liu" /> | + | NTCP utilizes secondary active transport to uptake bile salts from blood plasma into the cytoplasm of liver cells (Figure 4). The transport of one bile salt is driven by the downhill transport of 2 Na+ ions along sodium’s electrochemical gradient. Two bile salts and two Na+ ions bind to the <scene name='95/952697/Ntcp_open-pore_state_surface/4'>open-pore state</scene> (Figure 4a), but only one bile salt (along with two Na+ ions) is released into the cytoplasm.<ref name="Liu" /> After all substrates are bound, the conformational change from the open-pore state to the inward facing state is driven by the energetics of the favorable transport of Na+ ions.<ref name="Liu" /> The <scene name='95/952697/Ntcp_inward_facing_state/3'>inward facing state</scene> (Figure 4b) allows release of one bile salt and two Na+ ions into the cytoplasm. In this conformation, the pore closes off relative to the extracellular side and opens to the cytoplasmic side.<ref name="Asami" /> Afterwards, the remaining bile salt bound to NTCP shifts to the position the previous bile salt occupied, and the process repeats itself.<ref name = "Liu" /> The inherent amiphipathicity of bile acids allows passage through NTCP’s amphipathic pore (Figure 5)[[Image:Hydro_NEWEST_AdobeExpress_(1).gif|400 px|right|thumb|Figure 5. Amphipathic pore of NTCP highlighting hydrophobic residues (red) and hydrophilic residues (white). (PDB: [https://www.rcsb.org/structure/7PQQ 7PQQ])]] |
=== Mechanism of HBV/HDV Infection === | === Mechanism of HBV/HDV Infection === | ||
After binding to NTCP in the <scene name='95/952697/Ntcp_open-pore_state/26'>open-pore state</scene>, the viruses remain bound until low bile salt levels in the blood shift equilibria enough that [https://en.wikipedia.org/wiki/Endocytosis endocytosis] of the virus occurs. Once inside the cell, the viral genetic information is released. | After binding to NTCP in the <scene name='95/952697/Ntcp_open-pore_state/26'>open-pore state</scene>, the viruses remain bound until low bile salt levels in the blood shift equilibria enough that [https://en.wikipedia.org/wiki/Endocytosis endocytosis] of the virus occurs. Once inside the cell, the viral genetic information is released. | ||
- | The exact mechanism of how HBV and HDV bind to NTCP is not certain, <scene name='95/952696/Residues_84-87_and_157-165_new/1'>two critical sites</scene> on NTCP for HBV/HDV binding have been identified: residues <scene name='95/952696/Residues_84-87_new/1'>84-87</scene> and <scene name='95/952696/Residues_157-165_new/1'>157-165</scene>. An additional [https://en.wikipedia.org/wiki/Single-nucleotide_polymorphism single-nucleotide polymorphism] was discovered in East Asia involving <scene name='95/952696/Residue_267_new/15'>residue 267</scene> being mutated from serine to phenylalanine. This mutation prevented HBV/HDV infection presumably by blocking the binding site in the pore of NTCP. Another mutation, replacing <scene name='95/952696/Leucine_residues/2'>L27, L31, and L35</scene> with tryptophan residues prevents HBV/HDV infection. Further zooming in on <scene name='95/952696/Leucine_residues_zoomed/1'>these residues</scene>, it is probable that this mutation blocks the preS1 binding site of HBV/HDV. [https://en.wikipedia.org/wiki/Myristoylation Myristoylation] of the HBV/HDV capsid is also vital for recognition by NTCP, as well as residues 8-17 on HBV/HDV (sequence: NPLGFFPDHQ)<ref name="Park"/>. Two mechanisms have been proposed for how HBV/HDV binds to NTCP. The first mechanism involves binding of the myristoyl group to the host cell membrane, while residues 8-17 interact with NTCP residues <scene name='95/952696/Residues_157-165_new/1'>157-165</scene>. The second mechanism involves binding of the myristoyl group with residues 157-165 in the pore.<Ref name="Zhang"> Zhang X, Zhang Q, Peng Q, Zhou J, Liao L, Sun X, Zhang L, Gong T. Hepatitis B virus preS1-derived lipopeptide functionalized liposomes for targeting of hepatic cells. Biomaterials. 2014 Jul;35(23):6130-41. [https://dx.doi.org/10.1016/j.biomaterials.2014.04.037 DOI: 10.1016/j.biomaterials.2014.04.037]. </Ref> | + | The exact mechanism of how HBV and HDV bind to NTCP is not certain, <scene name='95/952696/Residues_84-87_and_157-165_new/1'>two critical sites</scene> on NTCP for HBV/HDV binding have been identified: residues <scene name='95/952696/Residues_84-87_new/1'>84-87</scene> and <scene name='95/952696/Residues_157-165_new/1'>157-165</scene>. An additional [https://en.wikipedia.org/wiki/Single-nucleotide_polymorphism single-nucleotide polymorphism] was discovered in East Asia involving <scene name='95/952696/Residue_267_new/15'>residue 267</scene> being mutated from serine to phenylalanine. This mutation prevented HBV/HDV infection presumably by blocking the binding site in the pore of NTCP. Another mutation, replacing <scene name='95/952696/Leucine_residues/2'>L27, L31, and L35</scene> with tryptophan residues prevents HBV/HDV infection. Further zooming in on <scene name='95/952696/Leucine_residues_zoomed/1'>these residues</scene>, it is probable that this mutation blocks the preS1 binding site of HBV/HDV. [https://en.wikipedia.org/wiki/Myristoylation Myristoylation] of the HBV/HDV capsid is also vital for recognition by NTCP, as well as residues 8-17 on HBV/HDV (sequence: NPLGFFPDHQ)<ref name="Park"/>. Two mechanisms have been proposed for how HBV/HDV binds to NTCP. The first mechanism involves binding of the myristoyl group to the host cell membrane, while residues 8-17 interact with NTCP residues <scene name='95/952696/Residues_157-165_new/1'>157-165</scene>. The second mechanism involves binding of the myristoyl group with residues 157-165 in the pore.<Ref name="Zhang"> Zhang X, Zhang Q, Peng Q, Zhou J, Liao L, Sun X, Zhang L, Gong T. Hepatitis B virus preS1-derived lipopeptide functionalized liposomes for targeting of hepatic cells. Biomaterials. 2014 Jul;35(23):6130-41. [https://dx.doi.org/10.1016/j.biomaterials.2014.04.037 DOI: 10.1016/j.biomaterials.2014.04.037]. </Ref> After successful binding via one of these two proposed mechanisms, the virus is eventually endocytosed as described above. |
== Medical Relevance == | == Medical Relevance == |
Revision as of 20:16, 16 April 2023
Sodium-taurocholate Co-transporting Polypeptide
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References
- ↑ 1.0 1.1 1.2 1.3 Goutam K, Ielasi FS, Pardon E, Steyaert J, Reyes N. Structural basis of sodium-dependent bile salt uptake into the liver. Nature. 2022 Jun;606(7916):1015-1020. DOI: 10.1038/s41586-022-04723-z.
- ↑ 2.0 2.1 2.2 2.3 Asami J, Kimura KT, Fujita-Fujiharu Y, Ishida H, Zhang Z, Nomura Y, Liu K, Uemura T, Sato Y, Ono M, Yamamoto M, Noda T, Shigematsu H, Drew D, Iwata S, Shimizu T, Nomura N, Ohto U. Structure of the bile acid transporter and HBV receptor NTCP. Nature. 2022 Jun; 606 (7916):1021-1026. DOI: 10.1038/s41586-022-04845-4.
- ↑ 3.0 3.1 Park JH, Iwamoto M, Yun JH, Uchikubo-Kamo T, Son D, Jin Z, Yoshida H, Ohki M, Ishimoto N, Mizutani K, Oshima M, Muramatsu M, Wakita T, Shirouzu M, Liu K, Uemura T, Nomura N, Iwata S, Watashi K, Tame JRH, Nishizawa T, Lee W, Park SY. Structural insights into the HBV receptor and bile acid transporter NTCP. Nature. 2022 Jun;606(7916):1027-1031. DOI: 10.1038/s41586-022-04857-0.
- ↑ 4.0 4.1 4.2 4.3 4.4 4.5 Liu H, Irobalieva RN, Bang-Sørensen R, Nosol K, Mukherjee S, Agrawal P, Stieger B, Kossiakoff AA, Locher KP. Structure of human NTCP reveals the basis of recognition and sodium-driven transport of bile salts into the liver. Cell Res. 2022 Aug;32(8):773-776. DOI: 10.1038/s41422-022-00680-4.
- ↑ Qi X, Li W. Unlocking the secrets to human NTCP structure. Innovation (Camb). 2022 Aug 1;3(5):100294. DOI: 10.1016/j.xinn.2022.100294.
- ↑ 6.0 6.1 Zhang X, Zhang Q, Peng Q, Zhou J, Liao L, Sun X, Zhang L, Gong T. Hepatitis B virus preS1-derived lipopeptide functionalized liposomes for targeting of hepatic cells. Biomaterials. 2014 Jul;35(23):6130-41. DOI: 10.1016/j.biomaterials.2014.04.037.
- ↑ 7.0 7.1 7.2 Patton JS, Carey MC. Watching fat digestion. Science. 1979 Apr 13;204(4389):145-8. DOI: 10.1126/science.432636.
- ↑ Donkers JM, Kooijman S, Slijepcevic D, Kunst RF, Roscam Abbing RL, Haazen L, de Waart DR, Levels JH, Schoonjans K, Rensen PC, Oude Elferink RP, van de Graaf SF. NTCP deficiency in mice protects against obesity and hepatosteatosis. JCI Insight. 2019 Jun 25;5(14):e127197. DOI: 10.1172/jci.insight.127197.
- ↑ 9.0 9.1 Shimura S, Watashi K, Fukano K, Peel M, Sluder A, Kawai F, Iwamoto M, Tsukuda S, Takeuchi JS, Miyake T, Sugiyama M, Ogasawara Y, Park SY, Tanaka Y, Kusuhara H, Mizokami M, Sureau C, Wakita T. Cyclosporin derivatives inhibit hepatitis B virus entry without interfering with NTCP transporter activity. J Hepatol. 2017 Apr;66(4):685-692. doi: 10.1016/j.jhep.2016.11.009. DOI: 10.1016/j.jhep.2016.11.009.
Student Contributors
- Ben Minor
- Maggie Samm
- Zac Stanley