Sandbox Reserved 1794
From Proteopedia
(Difference between revisions)
Line 25: | Line 25: | ||
==== Bile Salts ==== | ==== Bile Salts ==== | ||
- | + | Along with the sodium binding sites, the <scene name='95/952721/Amphipathic_patterns/2'>amphipathic pore</scene> is also characteristic of NTCP bile salt binding. The pore surface remains {{Template:ColorKey_Hydrophobic}}, while lining of the open pore state is largely {{Template:ColorKey_Polar}}. However, in the inward-facing, or closed-pore, conformation the polar pore residues are inaccessible. When the pore is closed only the surface hydrophobic residues are observed. As the pore opens up inner polar residues become accessible allowing for the binding of substrates. The pattern of hydrophobic and polar residues within the pore is believed to follow similar amphipathic patterns within taurocholate and other NTCP substrates, such as [https://en.wikipedia.org/wiki/Steroid steroids] and [https://en.wikipedia.org/wiki/Thyroid_hormones thyroid hormones]. <Ref name = Qi> Qi X. and Li W. (2022). Unlocking the secrets to human NTCP structure. The Innovation 3(5), 100294. https://doi.org/10.1016/j.xinn.2022.100294 </ref> Thus the channel provides specificity while preventing leakage of other substrates. When observing the relevant <scene name='95/952722/Bile_salts_res/1'>bile salt binding residues</scene> it is shown that some residues form Van der Waals interactions while others will form dipole-dipole or ionic interactions with bile salt substrates. The core domain appears to contribute most of the polar domains, while the panel domain contributes more hydrophobic residues. | |
=== Conformational Change === | === Conformational Change === | ||
Line 37: | Line 37: | ||
|} | |} | ||
- | NTCP exists in two different conformations; the <scene name='95/952722/Open_pore_conf/4'>open pore conformation</scene> and the <scene name='95/952722/Inward_facing_conf/1'>inward facing conformation</scene>. <ref name="Goutam"/> | + | In order to reveal these binding sites to initiate bile salt transport, NTCP exists in two different conformations; the <scene name='95/952722/Open_pore_conf/4'>open pore conformation</scene> and the <scene name='95/952722/Inward_facing_conf/1'>inward facing conformation</scene>. <ref name="Goutam"/> NTCP undergoes a conformational change from inward facing to open pore which exposes the binding sites to the extracellular region and allows the sodium ions and bile salts to bind. In this movement, the <scene name='95/952722/Ntcp_core_domain-_blue/8'>core domain</scene> and the <scene name='95/952722/Ntcp_panel_domain-_red/4'>panel domain</scene> rotate 20° with the <font color='red'><b>panel domain</b></font> moving 5 Å away from the <font color='#6060ff'><b>core domain</b></font>, which remains relatively rigid. This conformational change reveals the two sodium ion binding sites as well as the <scene name='95/952721/Amphipathic_patterns/2'>amphipathic pore</scene> in the membrane. The movement of the panel domain is facilitated by <scene name='95/952722/Pro_and_gly_hinges/5'>proline and glycine residues</scene> located in the <scene name='95/952722/Connector_helices/6'>connector helices</scene> between the panel and core domains. <scene name='95/952722/Pro_and_gly_hinges/7'>These residues</scene> <font color='#FCE205'><b>(yellow)</b></font> act as hinges that assist in the movement of the panel domain away from the core domain. <ref name="Goutam"/> |
== Bile Salt Transport == | == Bile Salt Transport == |
Revision as of 17:29, 17 April 2023
Sodium Taurocholate Co-Transporting Polypeptide
|
References
- ↑ Stieger B. The role of the sodium-taurocholate cotransporting polypeptide (NTCP) and of the bile salt export pump (BSEP) in physiology and pathophysiology of bile formation. Handb Exp Pharmacol. 2011;(201):205-59. doi: 10.1007/978-3-642-14541-4_5. PMID: 21103971. DOI: DOI: 10.1007/978-3-642-14541-4_5.
- ↑ Geyer, J., Wilke, T. & Petzinger, E. The solute carrier family SLC10: more than a family of bile acid transporters regarding function and phylogenetic relationships. Naunyn Schmied Arch Pharmacol 372, 413–431 (2006). https://doi.org/10.1007/s00210-006-0043-8
- ↑ 3.0 3.1 3.2 Park, JH., Iwamoto, M., Yun, JH. et al. Structural insights into the HBV receptor and bile acid transporter NTCP. Nature 606, 1027–1031 (2022). https://doi.org/10.1038/s41586-022-04857-0.
- ↑ 4.0 4.1 4.2 4.3 4.4 Goutam, K., Ielasi, F.S., Pardon, E. et al. Structural basis of sodium-dependent bile salt uptake into the liver. Nature 606, 1015–1020 (2022). DOI: 10.1038/s41586-022-04723-z.
- ↑ Qi X. and Li W. (2022). Unlocking the secrets to human NTCP structure. The Innovation 3(5), 100294. https://doi.org/10.1016/j.xinn.2022.100294
- ↑ 6.0 6.1 6.2 Liu, H., Irobalieva, R.N., Bang-Sørensen, R. et al. Structure of human NTCP reveals the basis of recognition and sodium-driven transport of bile salts into the liver. Cell Res 32, 773–776 (2022). https://doi.org/10.1038/s41422-022-00680-4
- ↑ Latorraca, N. R.; Fastman, N. M.; Venkatakrishnan, A. J.; Frommer, W. B.; Dror, R. O.; Feng, L. Mechanism of Substrate Translocation in an Alternating Access Transporter. Cell 2017, 169 (1), 96–107.
- ↑ 8.0 8.1 8.2 8.3 Asami, J., Kimura, K.T., Fujita-Fujiharu, Y. et al. Structure of the bile acid transporter and HBV receptor NTCP. Nature 606, 1021–1026 (2022). https://doi.org/10.1038/s41586-022-04845-4
- ↑ Grove, J.; Marsh, M. The Cell Biology of Receptor-Mediated Virus Entry. Journal of Cell Biology 2011, 195 (7), 1071–1082.
- ↑ 10.0 10.1 Herrscher C, Roingeard P, Blanchard E. Hepatitis B Virus Entry into Cells. Cells. 2020 Jun 18;9(6):1486. doi: 10.3390/cells9061486. PMID: 32570893; PMCID: PMC7349259.
Student Contributors
- Isabelle White
- Lena Barko