Sandbox Reserved 1797

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LdmS is relevant to any disease that is catalyzed by Met and Cys, which helps host the disease in the body. <ref>DOI:https://doi.org/10.1016/j.jbc.2022.102392</ref>
LdmS is relevant to any disease that is catalyzed by Met and Cys, which helps host the disease in the body. <ref>DOI:https://doi.org/10.1016/j.jbc.2022.102392</ref>
== Important amino acids==
== Important amino acids==
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<scene name='95/954094/Ligand/1'>The ligands</scene> are there to facilitate binding at the active sites to further catalyze the metabolism. The <scene name='95/954094/Polar_sites/1'>polar</scene> cavity and <scene name='95/954094/Hydrophobic_sites/1'>hydrophobic</scene> cavity are indicated here. These sites help the protein bind to other atoms even in an aqueous solutions.
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<scene name='95/954094/Ligand/1'>The ligands</scene> are there to facilitate binding at the active sites to further catalyze the metabolism. The <scene name='95/954094/Polar_sites/1'>polar</scene> cavity and <scene name='95/954094/Hydrophobic_sites/1'>hydrophobic</scene> cavity are indicated here. These sites help the protein bind to other atoms even in an aqueous solutions. The hydrophobic sites are actually inside of the protein so that they do not interact with the aqueous solution.
== Structural highlights ==
== Structural highlights ==
The <scene name='95/954094/Secondary_structure/1'>secondary structure</scene> is interesting to look at. The magenta color represents the alpha helices. The alpha helices represent how the protein chain is in real life. This model isn't exactly accurate as there is actually no space inside the helix, it is too full of other atoms. The orange color represents the beta strands. The beta strand forms hydrogen bonds with surrounding side chains. They also form hydrogen bonds with other beta strand which make it into a beta sheet.
The <scene name='95/954094/Secondary_structure/1'>secondary structure</scene> is interesting to look at. The magenta color represents the alpha helices. The alpha helices represent how the protein chain is in real life. This model isn't exactly accurate as there is actually no space inside the helix, it is too full of other atoms. The orange color represents the beta strands. The beta strand forms hydrogen bonds with surrounding side chains. They also form hydrogen bonds with other beta strand which make it into a beta sheet.
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The tertiary structure
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This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.
This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.

Revision as of 18:49, 27 April 2023

This Sandbox is Reserved from Mar 1 through Jun 1, 2023 for use in the course CHEM 351 Biochemistry taught by Bonnie_Hall at the Grand View University, Des Moines, USA. This reservation includes Sandbox Reserved 1796 through Sandbox Reserved 1811.
To get started:
  • Click the edit this page tab at the top. Save the page after each step, then edit it again.
  • show the Scene authoring tools, create a molecular scene, and save it. Copy the green link into the page.
  • Add a description of your scene. Use the buttons above the wikitext box for bold, italics, links, headlines, etc.

More help: Help:Editing

ʟ-aspartate–ʟ-methionine ligase (LdmS)(7r8p)

LdmS

Drag the structure with the mouse to rotate

References

  1. ↑ doi: https://dx.doi.org/https
  2. ↑ doi: https://dx.doi.org/https
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