This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4yq2

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 3: Line 3:
<StructureSection load='4yq2' size='340' side='right'caption='[[4yq2]], [[Resolution|resolution]] 2.65&Aring;' scene=''>
<StructureSection load='4yq2' size='340' side='right'caption='[[4yq2]], [[Resolution|resolution]] 2.65&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4yq2]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Haein Haein]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YQ2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4YQ2 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4yq2]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Haemophilus_influenzae_Rd_KW20 Haemophilus influenzae Rd KW20]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YQ2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4YQ2 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EFY:N-(1-{[(3-TERT-BUTYLBENZOYL)AMINO]METHYL}CYCLOPENTYL)-2,1-BENZOXAZOLE-4-CARBOXAMIDE'>EFY</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EFY:N-(1-{[(3-TERT-BUTYLBENZOYL)AMINO]METHYL}CYCLOPENTYL)-2,1-BENZOXAZOLE-4-CARBOXAMIDE'>EFY</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4ypw|4ypw]], [[4ypx|4ypx]], [[4ypz|4ypz]], [[4yq0|4yq0]], [[4yq1|4yq1]], [[4yq3|4yq3]], [[4yq4|4yq4]], [[4yq5|4yq5]], [[4yq6|4yq6]], [[4yq7|4yq7]], [[4yq8|4yq8]], [[4yq9|4yq9]], [[4yqa|4yqa]], [[4yqb|4yqb]], [[4yqc|4yqc]], [[4yqd|4yqd]], [[4yqg|4yqg]], [[4yqi|4yqi]], [[4yqj|4yqj]], [[4yqk|4yqk]], [[4yql|4yql]], [[4yqn|4yqn]], [[4yqo|4yqo]], [[4yqp|4yqp]], [[4yqq|4yqq]], [[4yqr|4yqr]], [[4yqs|4yqs]], [[4yqt|4yqt]], [[4ypy|4ypy]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4yq2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yq2 OCA], [https://pdbe.org/4yq2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4yq2 RCSB], [https://www.ebi.ac.uk/pdbsum/4yq2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4yq2 ProSAT]</span></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">trmD, HI_0202 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=71421 HAEIN])</td></tr>
+
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/tRNA_(guanine(37)-N(1))-methyltransferase tRNA (guanine(37)-N(1))-methyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.1.228 2.1.1.228] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4yq2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yq2 OCA], [http://pdbe.org/4yq2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4yq2 RCSB], [http://www.ebi.ac.uk/pdbsum/4yq2 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4yq2 ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/TRMD_HAEIN TRMD_HAEIN]] Specifically methylates guanosine-37 in various tRNAs (By similarity).[HAMAP-Rule:MF_00605]
+
[https://www.uniprot.org/uniprot/TRMD_HAEIN TRMD_HAEIN] Specifically methylates guanosine-37 in various tRNAs (By similarity).[HAMAP-Rule:MF_00605]
==See Also==
==See Also==
-
*[[TRNA methyltransferase|TRNA methyltransferase]]
+
*[[TRNA methyltransferase 3D structures|TRNA methyltransferase 3D structures]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Haein]]
+
[[Category: Haemophilus influenzae Rd KW20]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Bonnette, W G]]
+
[[Category: Bonnette WG]]
-
[[Category: Elkins, P A]]
+
[[Category: Elkins PA]]
-
[[Category: Knot]]
+
-
[[Category: Sam-binding]]
+
-
[[Category: Transferase-transferase inhibitor complex]]
+
-
[[Category: Trmd]]
+

Revision as of 08:25, 3 May 2023

Crystal structure of TrmD, a M1G37 tRNA Methyltransferase with SAM-competitive compounds

PDB ID 4yq2

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4yq2"
Personal tools