Hemoglobin 3D structures
From Proteopedia
(Difference between revisions)
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*Hemoglobin α subunit + β subunit | *Hemoglobin α subunit + β subunit | ||
| - | **[[3odq]], [[3kmf]], [[3dut]], [[2dn2]], [[1xxt]], [[1xz2]], [[1rq3]], [[1uiw]], [[1kd2]], [[1lfl]], [[1dke]], [[1qi8]], [[1a3n]], [[2hhd]], [[2hhe]], [[1hga]], [[1hgb]], [[1hgc]], [[2hhb]], [[3hhb]], [[4hhb]], [[2hbs]], [[1a3o]], [[1hbs]], [[3p5q]], [[4n7n]] - hHb α+β - human<br /> | + | **[[3odq]], [[3kmf]], [[3dut]], [[2dn2]], [[1xxt]], [[1xz2]], [[1rq3]], [[1uiw]], [[1kd2]], [[1lfl]], [[1dke]], [[1qi8]], [[1a3n]], [[2hhd]], [[2hhe]], [[1hga]], [[1hgb]], [[1hgc]], [[2hhb]], [[3hhb]], [[4hhb]], [[2hbs]], [[1a3o]], [[1hbs]], [[3p5q]], [[4n7n]], [[7dy3]], [[7dy4]], [[7ud7]] - hHb α+β - human<br /> |
| - | **[[6nbd]], [[6nbc]] - hHb α+β – Cryo EM<br /> | + | **[[6nbd]], [[6nbc]], [[7vde]], [[7xgy]] - hHb α+β – Cryo EM<br /> |
**[[5ni1]] - hHb α+β - Volta phase<br /> | **[[5ni1]] - hHb α+β - Volta phase<br /> | ||
**[[2dxm]] - hHb α+β – neutron<br /> | **[[2dxm]] - hHb α+β – neutron<br /> | ||
| - | **[[2h35]] - hHb α+β – NMR<br /> | + | **[[2h35]], [[2m6z]] - hHb α+β – NMR<br /> |
**[[1fn3]], [[1nih]], [[4n7p]], [[4n7o]], [[6lcw]], [[6lcx]] - hHb α+β+ Ni containing heme<br /> | **[[1fn3]], [[1nih]], [[4n7p]], [[4n7o]], [[6lcw]], [[6lcx]] - hHb α+β+ Ni containing heme<br /> | ||
**[[1qsh]], [[1qsi]] - hHb α+β+ Mg containing heme<br /> | **[[1qsh]], [[1qsi]] - hHb α+β+ Mg containing heme<br /> | ||
| - | **[[1xy0]], [[1xz5]], [[1xzu]], [[1xzv]], [[1y0a]], [[1y0c]], [[1y0t]], [[1y0w]], [[1y22]], [[1y2z]], [[1y31]], [[1y35]], [[1y45]], [[1y46]], [[1y4b]], [[1y4f]], [[1y4g]], [[1y4p]], [[1y4q]], [[1y4r]], [[1y4v]], [[1xye]], [[1xz4]], [[1xz7]], [[1y09]], [[1y0d]], [[1o1j]], [[1o1k]], [[1o1l]], [[1o1m]], [[1o1n]], [[1o1o]], [[1o1p]], [[1j7s]], [[1j7w]], [[1j7y]], [[1c7b]], [[1c7c]], [[1c7d]], [[1ch4]], [[1bzz]], [[6hbw]], [[1abw]], [[1a30]], [[1a00]], [[1a01]], [[1a0u]], [[1a0z]], [[1gbu]], [[1gli]], [[1hdb]], [[1dxt]], [[1dxu]], [[1dxv]], [[4mqh]], [[4mqi]] - hHb α+β (mutant)<br /> | + | **[[1xy0]], [[1xz5]], [[1xzu]], [[1xzv]], [[1y0a]], [[1y0c]], [[1y0t]], [[1y0w]], [[1y22]], [[1y2z]], [[1y31]], [[1y35]], [[1y45]], [[1y46]], [[1y4b]], [[1y4f]], [[1y4g]], [[1y4p]], [[1y4q]], [[1y4r]], [[1y4v]], [[1xye]], [[1xz4]], [[1xz7]], [[1y09]], [[1y0d]], [[1o1j]], [[1o1k]], [[1o1l]], [[1o1m]], [[1o1n]], [[1o1o]], [[1o1p]], [[1j7s]], [[1j7w]], [[1j7y]], [[1c7b]], [[1c7c]], [[1c7d]], [[1ch4]], [[1bzz]], [[6hbw]], [[1abw]], [[1a30]], [[1a00]], [[1a01]], [[1a0u]], [[1a0z]], [[1gbu]], [[1gli]], [[1hdb]], [[1dxt]], [[1dxu]], [[1dxv]], [[4mqh]], [[4mqi]], [[7uvb]] - hHb α+β (mutant)<br /> |
**[[1bz0]] - hHb α+β A<br /> | **[[1bz0]] - hHb α+β A<br /> | ||
**[[1cbl]] - hHb α+β β4<br /> | **[[1cbl]] - hHb α+β β4<br /> | ||
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**[[7jjq]] - hHb α+β + amphetamine derivative<br /> | **[[7jjq]] - hHb α+β + amphetamine derivative<br /> | ||
**[[3bev]] – cHb α + MHC I + β-microglobulin<br /> | **[[3bev]] – cHb α + MHC I + β-microglobulin<br /> | ||
| + | **[[8dov]] - hHb α+β + SHR<br /> | ||
| + | **[[7pch]], [[7pcq]] - hHb a + b + iron-regulated surface determinant protein H – Cryo EM<br /> | ||
| + | |||
| + | *Hb a | ||
| + | |||
| + | **[[3ovu]] - hHb a + a-HB-stabilizing protein + iron-regulated surface determinant protein H <br /> | ||
*Hb β | *Hb β | ||
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**[[4mqj]] - hHb α+γ-2<br /> | **[[4mqj]] - hHb α+γ-2<br /> | ||
**[[4mqk]] - hHb α+γ-2 (mutant)<br /> | **[[4mqk]] - hHb α+γ-2 (mutant)<br /> | ||
| + | **[[7qu4]] - hHb (mutant) +γ-2<br /> | ||
*Human hemoglobin variants | *Human hemoglobin variants | ||
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**[[1d8u]] – rHb<br /> | **[[1d8u]] – rHb<br /> | ||
**[[3qqq]] – Hb non-symbiotic – Poison peach<br /> | **[[3qqq]] – Hb non-symbiotic – Poison peach<br /> | ||
| + | **[[7zos]] – Hb non-symbiotic – sugar beet<br /> | ||
**[[2bmm]] – TfHb – ''Thermobifida fusca''<br /> | **[[2bmm]] – TfHb – ''Thermobifida fusca''<br /> | ||
**[[4uzv]] – TfHb (mutant)<br /> | **[[4uzv]] – TfHb (mutant)<br /> | ||
**[[1kfr]], [[1h97]] – Hb – ''Paramphistomum epiclitum''<br /> | **[[1kfr]], [[1h97]] – Hb – ''Paramphistomum epiclitum''<br /> | ||
**[[1gcv]] – MgHb - ''Mustelus griseus''<br /> | **[[1gcv]] – MgHb - ''Mustelus griseus''<br /> | ||
| - | **[[1vhb]] – VsHb – ''Vitreoscilla stercoraria''<br /> | + | **[[1vhb]], [[3tld]], [[3tm3]] – VsHb – ''Vitreoscilla stercoraria''<br /> |
| + | **[[3tm9]] – VsHb (mutant)<br /> | ||
**[[4vhb]] – VsHb + SCN<br /> | **[[4vhb]] – VsHb + SCN<br /> | ||
**[[1hlb]], [[1hlm]] – Hb – ''Caudina arenicola''<br /> | **[[1hlb]], [[1hlm]] – Hb – ''Caudina arenicola''<br /> | ||
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**[[1x9f]] – GiHb+CO – worm<br /> | **[[1x9f]] – GiHb+CO – worm<br /> | ||
| - | **[[2zs0]], [[2zs1]], [[2zfo]], [[2d2m]], [[2d2n]] – GiHb+O2 – Beard worm<br /> | + | **[[2zs0]], [[2zs1]], [[2zfo]], [[2d2m]], [[2d2n]], [[7e96]], [[7e97]], [[7e98]], [[7e99]] – GiHb+O2 – Beard worm<br /> |
**[[1yhu]] – GiHb+O2 – Tube worm<br /> | **[[1yhu]] – GiHb+O2 – Tube worm<br /> | ||
| - | **[[3wcw]] - GiHb+O2 – Vent tube worm<br /> | + | **[[3wct]], [[3wcu]], [[3wcv]], [[3wcw]], [[7vlc]], [[7vle]] [[7vlf]] - GiHb+O2 – Vent tube worm<br /> |
| - | **[[ | + | **[[4u8u]] – GtGIHb + CN – ''Glossoscolex taulistus''<br /> |
| + | **[[4wch]] – GtGIHb chain D + O2 <br /> | ||
*Truncated hemoglobin | *Truncated hemoglobin | ||
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**[[3aq5]] – TpTrHb+ O2 – ''Tetrahymena pyriformis''<br /> | **[[3aq5]] – TpTrHb+ O2 – ''Tetrahymena pyriformis''<br /> | ||
**[[3aq6]] – TpTrHb III<br /> | **[[3aq6]] – TpTrHb III<br /> | ||
| - | **[[3aq7]], [[3aq8]] - TpHb III (mutant)<br /> | + | **[[3aq7]], [[3aq8]], [[3aq9]] - TpHb III (mutant)<br /> |
| + | **[[7tt9]] - TrHb – ''Shewanella benthica''<br /> | ||
*Methemoglobin α subunit + β subunit | *Methemoglobin α subunit + β subunit | ||
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**[[1moh]] - LpMetHb + H2S - ''Lucina pectinata''<br /> | **[[1moh]] - LpMetHb + H2S - ''Lucina pectinata''<br /> | ||
**[[1flp]], [[3pi1]], [[3pi2]], [[3pi3]], [[3pi4]] – LpMetHb<br /> | **[[1flp]], [[3pi1]], [[3pi2]], [[3pi3]], [[3pi4]] – LpMetHb<br /> | ||
| + | **[[7pcf]] - MetHb a + b - ''Staphylococcus aureus''<br /> | ||
*Leghemoglobin | *Leghemoglobin | ||
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*Hemoglobin α subunit + β subunit + CO | *Hemoglobin α subunit + β subunit + CO | ||
| - | **[[3d17]], [[1yzi]], [[1j3y]], [[1j3z]], [[1j40]], [[1j41]], [[1ljw]], [[1ird]], [[1bbb]], [[1hco]], [[2hco]], [[2dn3]], [[3s65]], [[5e6e]], [[6hal]], [[6kao]], [[6kap]], [[6kaq]], [[6kar]], [[6kas]], [[6kat]], [[6kau]], [[6kav]], [[6kye]], [[6l5v]], [[6l5w]], [[6l5x]], [[6l5y]], [[7aet]] - hHb α+β + CO<br /> | + | **[[3d17]], [[1yzi]], [[1j3y]], [[1j3z]], [[1j40]], [[1j41]], [[1ljw]], [[1ird]], [[1bbb]], [[1hco]], [[2hco]], [[2dn3]], [[3s65]], [[5e6e]], [[6hal]], [[6kao]], [[6kap]], [[6kaq]], [[6kar]], [[6kas]], [[6kat]], [[6kau]], [[6kav]], [[6kye]], [[6l5v]], [[6l5w]], [[6l5x]], [[6l5y]], [[7aet]], [[7k4m]], [[7uf6]], [[7uf7]], [[8egi]] - hHb α+β + CO<br /> |
**[[1mko]] - hHb α+β A + CO<br /> | **[[1mko]] - hHb α+β A + CO<br /> | ||
**[[1cbm]] - hHb α+β β4 + CO<br /> | **[[1cbm]] - hHb α+β β4 + CO<br /> | ||
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*Hemoglobin α subunit + β subunit + O2 | *Hemoglobin α subunit + β subunit + O2 | ||
| - | **[[2dn1]], [[1lfq]], [[1lft]], [[1lfv]], [[1lfy]], [[1lfz]], [[1gzx]], [[1thb]], [[1hho]], [[5hy8]], [[6bb5]], [[5woh]], [[5wog]] – hHb α+β +O2<br /> | + | **[[2dn1]], [[1lfq]], [[1lft]], [[1lfv]], [[1lfy]], [[1lfz]], [[1gzx]], [[1thb]], [[1hho]], [[5hy8]], [[6bb5]], [[5woh]], [[5wog]], [[7ud8]] – hHb α+β +O2<br /> |
**[[1yeo]], [[1yh9]], [[1yhe]], [[1yhr]], [[1yie]], [[1yih]], [[1yen]], [[1yeq]], [[1yeu]], [[1yev]], [[1yg5]], [[1ygd]], [[1ygf]], [[1y8w]], [[1ydz]], [[1ye0]], [[1ye1]], [[1ye2]], [[1y7z]], [[1y83]], [[1y85]], [[1y5f]], [[1y5j]], [[1y5k]], [[1y7c]], [[1y7d]], [[1y7g]], [[1gbv]] - hHb α+β (mutant) + O2<br /> | **[[1yeo]], [[1yh9]], [[1yhe]], [[1yhr]], [[1yie]], [[1yih]], [[1yen]], [[1yeq]], [[1yeu]], [[1yev]], [[1yg5]], [[1ygd]], [[1ygf]], [[1y8w]], [[1ydz]], [[1ye0]], [[1ye1]], [[1ye2]], [[1y7z]], [[1y83]], [[1y85]], [[1y5f]], [[1y5j]], [[1y5k]], [[1y7c]], [[1y7d]], [[1y7g]], [[1gbv]] - hHb α+β (mutant) + O2<br /> | ||
**[[7jy0]], [[7jy1]], [[7jy3]] - hHb + O2 + pyrazole derivative<br /> | **[[7jy0]], [[7jy1]], [[7jy3]] - hHb + O2 + pyrazole derivative<br /> | ||
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*Dimeric hemoglobin (Globin-1) | *Dimeric hemoglobin (Globin-1) | ||
| - | **[[2z85]], [[2aur]], [[2av3]], [[1jzk]], [[1jzm]], [[4hbi | + | **[[2z85]], [[2aur]], [[2av3]], [[1jzk]], [[1jzm]], [[4hbi]], [[2grf]], [[3uhk]], [[3uhn]], [[3uhq]], [[3uhr]], [[3uhs]], [[3uht]], [[3uhu]], [[3uhv]], [[3uhw]], [[3uhx]], [[3uhy]], [[3uhz]], [[3ui0]], [[3ugy]], [[6hbi]]- AcHb (mutant) - Ark clam<br /> |
**[[4sdh]] - AcHb α+β<br /> | **[[4sdh]] - AcHb α+β<br /> | ||
| - | **[[3g46]], [[3g4q]], [[3g4r]], [[3g4u]], [[3g4v]], [[3g4w]], [[3g4y]], [[3g52]], [[3g53]], [[4hrr]], [[3sdh]], [[1nxf]], [[3uhd]], [[1nw1]], [[1nwn]] – AcHb +CO<br /> | + | **[[3g46]], [[3g4q]], [[3g4r]], [[3g4u]], [[3g4v]], [[3g4w]], [[3g4y]], [[3g52]], [[3g53]], [[4hrr]], [[3sdh]], [[1nxf]], [[3uhd]], [[1nw1]], [[1nwn]], [[3qob]]]]3hbi]], – AcHb +CO<br /> |
| - | **[[2r4w]], [[2r4x]], [[2r4y]], [[2r4z]], [[2z8a]], [[2grh]], [[2auo]], [[2aup]], [[2auq]], [[2av0]], [[1jzl]], [[1jwn]], [[5hbi]], [[7hbi]], [[1grz]], [[3ugz]], [[3uh3]], [[3uh5]], [[3uh6]], [[3uh7]], [[3uhb]], [[3uhc]], [[3uhd]], [[3uhe]], [[3uhg]], [[3uhh]], [[3uhi]] – AcHb (mutant) + CO<br /> | + | **[[2r4w]], [[2r4x]], [[2r4y]], [[2r4z]], [[2z8a]], [[2grh]], [[2auo]], [[2aup]], [[2auq]], [[2av0]], [[1jzl]], [[1jwn]], [[5hbi]], [[7hbi]], [[1grz]], [[3ugz]], [[3uh3]], [[3uh5]], [[3uh6]], [[3uh7]], [[3uhb]], [[3uhc]], [[3uhd]], [[3uhe]], [[3uhg]], [[3uhh]], [[3uhi]], [[7hbi]] – AcHb (mutant) + CO<br /> |
**[[1hbi]] - AcHb +O2<br /> | **[[1hbi]] - AcHb +O2<br /> | ||
**[[3zhw]] – EcHb - ''Escherichia coli''<br /> | **[[3zhw]] – EcHb - ''Escherichia coli''<br /> | ||
| - | **[[6hbi]] – AiHb (mutant) – ''Anadara inaeqivalvis''<br /> | ||
| - | **[[7hbi]] – AiHb (mutant) + CO <br /> | ||
*Tetrameric hemoglobin (Globin-2) | *Tetrameric hemoglobin (Globin-2) | ||
Revision as of 07:36, 15 May 2023
Updated on 15-May-2023 - For a general description of the protein see Hemoglobin
