This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.

4zmy

From Proteopedia

(Difference between revisions)

Jump to: navigation, search

Revision as of 07:34, 18 May 2023

Crystal structure of human P-cadherin (monomer 1)

Structural highlights

4zmy is a 1 chain structure with sequence from Homo sapiens. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Disease

CADH3_HUMAN Hypotrichosis with juvenile macular degeneration;EEM syndrome. The disease is caused by mutations affecting the gene represented in this entry. The disease is caused by mutations affecting the gene represented in this entry.

Function

CADH3_HUMAN Cadherins are calcium-dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells; cadherins may thus contribute to the sorting of heterogeneous cell types.

Publication Abstract from PubMed

Orderly assembly of classical cadherins governs cell adhesion and tissue maintenance. A key event is the strand-swap dimerization of the extracellular ectodomains of two cadherin molecules from apposing cells. Here we have determined crystal structures of P-cadherin in six different conformational states to elaborate a motion picture of its adhesive dimerization at the atomic level. The snapshots revealed that cell-adhesive dimerization is facilitated by several intermediate states collectively termed X-dimer in analogy to other classical cadherins. Based on previous studies and on the combined structural, kinetic, thermodynamic, biochemical, and cellular data reported herein, we propose that the adhesive dimerization of human P-cadherin is achieved by a stepwise mechanism analogous to that of assembly chaperones. This mechanism, applicable to type I classical cadherins, confers high specificity and fast association rates. We expect these findings to guide innovative therapeutic approaches targeting P-cadherin in cancer.

Adhesive Dimerization of Human P-Cadherin Catalyzed by a Chaperone-like Mechanism.,Kudo S, Caaveiro JM, Tsumoto K Structure. 2016 Sep 6;24(9):1523-1536. doi: 10.1016/j.str.2016.07.002. Epub 2016 , Aug 18. PMID:27545624^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Kudo S, Caaveiro JM, Tsumoto K. Adhesive Dimerization of Human P-Cadherin Catalyzed by a Chaperone-like Mechanism. Structure. 2016 Sep 6;24(9):1523-1536. doi: 10.1016/j.str.2016.07.002. Epub 2016 , Aug 18. PMID:27545624 doi:http://dx.doi.org/10.1016/j.str.2016.07.002

1 Structural highlights
2 Disease
3 Function
4 Publication Abstract from PubMed
5 See Also
6 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4zmy"

Categories: Homo sapiens | Large Structures | Caaveiro JMM | Kudo S | Tsumoto K

@@ Line 3: / Line 3: @@
 <StructureSection load='4zmy' size='340' side='right'caption='[[4zmy]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[4zmy]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ZMY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ZMY FirstGlance]. <br>
+<table><tr><td colspan='2'>[[4zmy]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ZMY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4ZMY FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4zml|4zml]], [[4zmn|4zmn]], [[4zmo|4zmo]], [[4zmp|4zmp]], [[4zmq|4zmq]], [[4zmt|4zmt]], [[4zmv|4zmv]], [[4zmw|4zmw]], [[4zmx|4zmx]], [[4zmz|4zmz]]</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4zmy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zmy OCA], [https://pdbe.org/4zmy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4zmy RCSB], [https://www.ebi.ac.uk/pdbsum/4zmy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4zmy ProSAT]</span></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CDH3, CDHP ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4zmy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zmy OCA], [http://pdbe.org/4zmy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4zmy RCSB], [http://www.ebi.ac.uk/pdbsum/4zmy PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4zmy ProSAT]</span></td></tr>
 </table>
 == Disease ==
-[[http://www.uniprot.org/uniprot/CADH3_HUMAN CADH3_HUMAN]] Hypotrichosis with juvenile macular degeneration;EEM syndrome. The disease is caused by mutations affecting the gene represented in this entry.  The disease is caused by mutations affecting the gene represented in this entry.
+[https://www.uniprot.org/uniprot/CADH3_HUMAN CADH3_HUMAN] Hypotrichosis with juvenile macular degeneration;EEM syndrome. The disease is caused by mutations affecting the gene represented in this entry.  The disease is caused by mutations affecting the gene represented in this entry.
 == Function ==
-[[http://www.uniprot.org/uniprot/CADH3_HUMAN CADH3_HUMAN]] Cadherins are calcium-dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells; cadherins may thus contribute to the sorting of heterogeneous cell types.
+[https://www.uniprot.org/uniprot/CADH3_HUMAN CADH3_HUMAN] Cadherins are calcium-dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells; cadherins may thus contribute to the sorting of heterogeneous cell types.
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 29: / Line 27: @@
 __TOC__
 </StructureSection>
-[[Category: Human]]
+[[Category: Homo sapiens]]
 [[Category: Large Structures]]
-[[Category: Caaveiro, J M.M]]
+[[Category: Caaveiro JMM]]
-[[Category: Kudo, S]]
+[[Category: Kudo S]]
-[[Category: Tsumoto, K]]
+[[Category: Tsumoto K]]
-[[Category: Cell adhesion]]
-[[Category: Conformational change]]
-[[Category: Dimerization]]

4zmy

From Proteopedia

Revision as of 07:34, 18 May 2023

Crystal structure of human P-cadherin (monomer 1)

Structural highlights

Disease

Function

Publication Abstract from PubMed

See Also

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

Views

Personal tools

Navigation

Search

Toolbox