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| ==NMR structure of a 180 residue construct encompassing the N-terminal metal-binding site and the membrane proximal domain of SilB from Cupriavidus metallidurans CH34== | | ==NMR structure of a 180 residue construct encompassing the N-terminal metal-binding site and the membrane proximal domain of SilB from Cupriavidus metallidurans CH34== |
- | <StructureSection load='5a4g' size='340' side='right'caption='[[5a4g]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''> | + | <StructureSection load='5a4g' size='340' side='right'caption='[[5a4g]]' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[5a4g]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Cupmc Cupmc]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5A4G OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5A4G FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5a4g]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Cupriavidus_metallidurans_CH34 Cupriavidus metallidurans CH34]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5A4G OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5A4G FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AG:SILVER+ION'>AG</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AG:SILVER+ION'>AG</scene></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5a4g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5a4g OCA], [http://pdbe.org/5a4g PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5a4g RCSB], [http://www.ebi.ac.uk/pdbsum/5a4g PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5a4g ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5a4g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5a4g OCA], [https://pdbe.org/5a4g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5a4g RCSB], [https://www.ebi.ac.uk/pdbsum/5a4g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5a4g ProSAT]</span></td></tr> |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/Q58AF3_CUPMC Q58AF3_CUPMC] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Cupmc]] | + | [[Category: Cupriavidus metallidurans CH34]] |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Bersch, B]] | + | [[Category: Bersch B]] |
- | [[Category: Fernandez, P Urbina]] | + | [[Category: Urbina Fernandez P]] |
- | [[Category: Vandenbussche, G]] | + | [[Category: Vandenbussche G]] |
- | [[Category: Membrane fusion protein]]
| + | |
- | [[Category: Metal binding protein]]
| + | |
- | [[Category: Metal site]]
| + | |
- | [[Category: Resistance nodulation cell division]]
| + | |
- | [[Category: Rnd]]
| + | |
- | [[Category: Silver]]
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| Structural highlights
Function
Q58AF3_CUPMC
Publication Abstract from PubMed
Silver ion resistance in bacteria mainly relies on efflux systems, and notably on tripartite efflux complexes involving a transporter from the resistance-nodulation-cell division (RND) superfamily, such as the SilCBA system from Cupriavidus metallidurans CH34. The periplasmic adaptor protein SilB hosts two specific metal coordination sites, located in the N-terminal and C-terminal domains, respectively, that are believed to play a different role in the efflux mechanism and the trafficking of metal ions from the periplasm to the RND transporter. On the basis of the known domain structure of periplasmic adaptor proteins, we designed different protein constructs derived from SilB domains with either one or two metal binding sites per protein chain. ITC data acquired on proteins with single metal sites suggest a slightly higher affinity of Ag(+) for the N-terminal metal site, compared to that for the C-terminal one. Remarkably, via the study of a protein construct featuring both metal sites, nuclear magnetic resonance (NMR) and fluorescence spectroscopies concordantly show that the C-terminal site is saturated prior to the N-terminal one. The C-terminal binding site is supposed to transfer the metal ions to the RND protein, while the transport driven by this latter is activated upon binding of the metal ion to the N-terminal site. Our results suggest that the filling of the C-terminal metal site is a key prerequisite for preventing futile activation of the transport system. Exhaustive NMR studies reveal for the first time the structure and dynamics of the functionally important N-terminal domain connected to the membrane proximal domain as well as of its Ag(+) binding site.
Structural and Functional Investigation of the Ag(+)/Cu(+) Binding Domains of the Periplasmic Adaptor Protein SilB from Cupriavidus metallidurans CH34.,Urbina P, Bersch B, De Angelis F, Derfoufi KM, Prevost M, Goormaghtigh E, Vandenbussche G Biochemistry. 2016 May 24;55(20):2883-97. doi: 10.1021/acs.biochem.6b00022. Epub , 2016 May 13. PMID:27145046[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Urbina P, Bersch B, De Angelis F, Derfoufi KM, Prevost M, Goormaghtigh E, Vandenbussche G. Structural and Functional Investigation of the Ag(+)/Cu(+) Binding Domains of the Periplasmic Adaptor Protein SilB from Cupriavidus metallidurans CH34. Biochemistry. 2016 May 24;55(20):2883-97. doi: 10.1021/acs.biochem.6b00022. Epub , 2016 May 13. PMID:27145046 doi:http://dx.doi.org/10.1021/acs.biochem.6b00022
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