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| | <StructureSection load='5a9g' size='340' side='right'caption='[[5a9g]], [[Resolution|resolution]] 1.35Å' scene=''> | | <StructureSection load='5a9g' size='340' side='right'caption='[[5a9g]], [[Resolution|resolution]] 1.35Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[5a9g]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_33861 Atcc 33861]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5A9G OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5A9G FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5a9g]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Sphingobacterium_spiritivorum Sphingobacterium spiritivorum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5A9G OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5A9G FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr> |
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Superoxide_dismutase Superoxide dismutase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.15.1.1 1.15.1.1] </span></td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5a9g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5a9g OCA], [https://pdbe.org/5a9g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5a9g RCSB], [https://www.ebi.ac.uk/pdbsum/5a9g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5a9g ProSAT]</span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5a9g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5a9g OCA], [http://pdbe.org/5a9g PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5a9g RCSB], [http://www.ebi.ac.uk/pdbsum/5a9g PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5a9g ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/A0A0M3KL50_SPHSI A0A0M3KL50_SPHSI] Destroys radicals which are normally produced within the cells and which are toxic to biological systems.[RuleBase:RU000414] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | | | |
| | ==See Also== | | ==See Also== |
| - | *[[Superoxide Dismutase|Superoxide Dismutase]] | + | *[[Superoxide dismutase 3D structures|Superoxide dismutase 3D structures]] |
| | == References == | | == References == |
| | <references/> | | <references/> |
| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Atcc 33861]] | |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Superoxide dismutase]] | + | [[Category: Sphingobacterium spiritivorum]] |
| - | [[Category: Bugg, T D.H]] | + | [[Category: Bugg TDH]] |
| - | [[Category: Fulop, V]] | + | [[Category: Fulop V]] |
| - | [[Category: Liu, Y]] | + | [[Category: Liu Y]] |
| - | [[Category: Rashid, G M.M]] | + | [[Category: Rashid GMM]] |
| - | [[Category: Rea, D]] | + | [[Category: Rea D]] |
| - | [[Category: Taylor, C R]] | + | [[Category: Taylor CR]] |
| - | [[Category: Zhang, X]] | + | [[Category: Zhang X]] |
| - | [[Category: Lignin oxidation]]
| + | |
| - | [[Category: Lignin valorisation]]
| + | |
| - | [[Category: Manganese superoxide dismutase]]
| + | |
| - | [[Category: Oxidoreductase]]
| + | |
| - | [[Category: Sphingobacterium]]
| + | |
| Structural highlights
Function
A0A0M3KL50_SPHSI Destroys radicals which are normally produced within the cells and which are toxic to biological systems.[RuleBase:RU000414]
Publication Abstract from PubMed
The valorization of aromatic heteropolymer lignin is an important unsolved problem in the development of a biomass-based biorefinery, for which novel high-activity biocatalysts are needed. Sequencing of the genomic DNA of lignin-degrading bacterial strain Sphingobacterium sp. T2 revealed no matches to known lignin-degrading genes. Proteomic matches for two manganese superoxide dismutase proteins were found in partially purified extracellular fractions. Recombinant MnSOD1 and MnSOD2 were both found to show high activity for oxidation of Organosolv and Kraft lignin, and lignin model compounds, generating multiple oxidation products. Structure determination revealed that the products result from aryl-Calpha and Calpha-Cbeta bond oxidative cleavage and O-demethylation. The crystal structure of MnSOD1 was determined to 1.35 A resolution, revealing a typical MnSOD homodimer harboring a five-coordinate trigonal bipyramidal Mn(II) center ligated by three His, one Asp, and a water/hydroxide in each active site. We propose that the lignin oxidation reactivity of these enzymes is due to the production of a hydroxyl radical, a highly reactive oxidant. This is the first demonstration that MnSOD is a microbial lignin-oxidizing enzyme.
Identification of Manganese Superoxide Dismutase from Sphingobacterium sp. T2 as a Novel Bacterial Enzyme for Lignin Oxidation.,Rashid GM, Taylor CR, Liu Y, Zhang X, Rea D, Fulop V, Bugg TD ACS Chem Biol. 2015 Aug 3. PMID:26198187[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Rashid GM, Taylor CR, Liu Y, Zhang X, Rea D, Fulop V, Bugg TD. Identification of Manganese Superoxide Dismutase from Sphingobacterium sp. T2 as a Novel Bacterial Enzyme for Lignin Oxidation. ACS Chem Biol. 2015 Aug 3. PMID:26198187 doi:http://dx.doi.org/10.1021/acschembio.5b00298
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