|
|
| Line 3: |
Line 3: |
| | <StructureSection load='5ab5' size='340' side='right'caption='[[5ab5]], [[Resolution|resolution]] 2.00Å' scene=''> | | <StructureSection load='5ab5' size='340' side='right'caption='[[5ab5]], [[Resolution|resolution]] 2.00Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[5ab5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Trybb Trybb]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5AB5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5AB5 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5ab5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Trypanosoma_brucei_brucei Trypanosoma brucei brucei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5AB5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5AB5 FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5ab4|5ab4]], [[5ab6|5ab6]], [[5ab7|5ab7]]</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ab5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ab5 OCA], [https://pdbe.org/5ab5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ab5 RCSB], [https://www.ebi.ac.uk/pdbsum/5ab5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ab5 ProSAT]</span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ab5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ab5 OCA], [http://pdbe.org/5ab5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ab5 RCSB], [http://www.ebi.ac.uk/pdbsum/5ab5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ab5 ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/C9ZUV7_TRYB9 C9ZUV7_TRYB9] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
| Line 22: |
Line 23: |
| | </StructureSection> | | </StructureSection> |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Trybb]] | + | [[Category: Trypanosoma brucei brucei]] |
| - | [[Category: Harijan, R K]] | + | [[Category: Harijan RK]] |
| - | [[Category: Kiema, T R]] | + | [[Category: Kiema TR]] |
| - | [[Category: Wierenga, R K]] | + | [[Category: Wierenga RK]] |
| - | [[Category: Coenzyme some]]
| + | |
| - | [[Category: Gene knockout]]
| + | |
| - | [[Category: Lipid metabolism]]
| + | |
| - | [[Category: Malonyl-coa decarboxylase]]
| + | |
| - | [[Category: Scp2-thiolase]]
| + | |
| - | [[Category: Scp2-thiolase-like protein]]
| + | |
| - | [[Category: Transport protein]]
| + | |
| Structural highlights
Function
C9ZUV7_TRYB9
Publication Abstract from PubMed
Bioinformatics studies have shown that the genomes of trypanosomatid species each encode one SCP2-thiolase-like protein (SLP), which is characterized by having the YDCF thiolase sequence fingerprint of the Cbeta2-Calpha2 loop. SLPs are only encoded by the genomes of these parasitic protists and not by those of mammals, including human. Deletion of the Trypanosoma brucei SLP gene (TbSLP) increases the doubling time of procyclic T. brucei and causes a 5-fold reduction of de novo sterol biosynthesis from glucose- and acetate-derived acetyl-CoA. Fluorescence analyses of EGFP-tagged TbSLP expressed in the parasite located the TbSLP in the mitochondrion. The crystal structure of TbSLP (refined at 1.75 A resolution) confirms that TbSLP has the canonical dimeric thiolase fold. In addition, the structures of the TbSLP-acetoacetyl-CoA (1.95 A) and TbSLP-malonyl-CoA (2.30 A) complexes reveal that the two oxyanion holes of the thiolase active site are preserved. TbSLP binds malonyl-CoA tightly (Kd 90 microM), acetoacetyl-CoA moderately (Kd 0.9 mM) and acetyl-CoA and CoA very weakly. TbSLP possesses low malonyl-CoA decarboxylase activity. Altogether, the data show that TbSLP is a mitochondrial enzyme involved in lipid metabolism. This article is protected by copyright. All rights reserved.
The SCP2-thiolase-like protein (SLP) of Trypanosoma brucei is an enzyme involved in lipid metabolism.,Harijan RK, Mazet M, Kiema TR, Bouyssou G, Alexson SE, Bergmann U, Moreau P, Michels PA, Bringaud F, Wierenga RK Proteins. 2016 Apr 19. doi: 10.1002/prot.25054. PMID:27093562[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Harijan RK, Mazet M, Kiema TR, Bouyssou G, Alexson SE, Bergmann U, Moreau P, Michels PA, Bringaud F, Wierenga RK. The SCP2-thiolase-like protein (SLP) of Trypanosoma brucei is an enzyme involved in lipid metabolism. Proteins. 2016 Apr 19. doi: 10.1002/prot.25054. PMID:27093562 doi:http://dx.doi.org/10.1002/prot.25054
|
