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| | ==Fpr4 PPI domain== | | ==Fpr4 PPI domain== |
| - | <StructureSection load='4bf8' size='340' side='right'caption='[[4bf8]], [[NMR_Ensembles_of_Models | 12 NMR models]]' scene=''> | + | <StructureSection load='4bf8' size='340' side='right'caption='[[4bf8]]' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[4bf8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_18824 Atcc 18824]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4BF8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4BF8 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4bf8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4BF8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4BF8 FirstGlance]. <br> |
| - | </td></tr><tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Peptidylprolyl_isomerase Peptidylprolyl isomerase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.2.1.8 5.2.1.8] </span></td></tr> | + | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4bf8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4bf8 OCA], [https://pdbe.org/4bf8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4bf8 RCSB], [https://www.ebi.ac.uk/pdbsum/4bf8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4bf8 ProSAT]</span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4bf8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4bf8 OCA], [https://pdbe.org/4bf8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4bf8 RCSB], [https://www.ebi.ac.uk/pdbsum/4bf8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4bf8 ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | == Function == | | == Function == |
| - | [[https://www.uniprot.org/uniprot/FKBP4_YEAST FKBP4_YEAST]] PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity).
| + | [https://www.uniprot.org/uniprot/FKBP4_YEAST FKBP4_YEAST] PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Atcc 18824]] | |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Peptidylprolyl isomerase]] | + | [[Category: Saccharomyces cerevisiae]] |
| - | [[Category: Mackereth, C]] | + | [[Category: Mackereth C]] |
| - | [[Category: Monneau, Y]] | + | [[Category: Monneau Y]] |
| - | [[Category: Fkbp]]
| + | |
| - | [[Category: Histone chaperone]]
| + | |
| - | [[Category: Isomerase]]
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| - | [[Category: Proline isomerization]]
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| Structural highlights
Function
FKBP4_YEAST PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity).
Publication Abstract from PubMed
The FK506-binding protein (FKBP) family of peptidyl prolyl isomerases (PPIases) is characterized by a common catalytic domain that binds to the inhibitors FK506 and rapamycin. As one of four FKBPs within the yeast Saccharomyces cerevisiae, Fpr4 has been described as a histone chaperone, and is in addition implicated in epigenetic function in part due to its mediation of cis-trans conversion of proline residues within histone tails. To better understand the molecular details of this activity, we have determined the solution structure of the Fpr4 C-terminal PPIase domain by using NMR spectroscopy. This canonical FKBP domain actively increases the rate of isomerization of three decapeptides derived from the N-terminus of yeast histone H3, while maintaining intrinsic cis and trans populations. Observation of the uncatalyzed and Fpr4-catalyzed isomerization rates at equilibrium demonstrate Pro16 and Pro30 of histone H3 as the major proline targets of Fpr4, with little activity shown against Pro38. This alternate ranking of the three target prolines, as compared to affinity determination or the classical chymotrypsin-based fluorescent assay, reveals the mechanistic importance of substrate residues C-terminal to the peptidyl-prolyl bond.
Structure and activity of the peptidyl-prolyl isomerase domain from the histone chaperone Fpr4 towards histone H3 proline isomerization.,Monneau YR, Soufari H, Nelson CJ, Mackereth CD J Biol Chem. 2013 Jul 25. PMID:23888048[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Monneau YR, Soufari H, Nelson CJ, Mackereth CD. Structure and activity of the peptidyl-prolyl isomerase domain from the histone chaperone Fpr4 towards histone H3 proline isomerization. J Biol Chem. 2013 Jul 25. PMID:23888048 doi:10.1074/jbc.M113.479964
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