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5y4b

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Solution structure of yeast Fra2

Structural highlights

5y4b is a 1 chain structure with sequence from Saccharomyces cerevisiae S288C. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance.
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

BOL2_YEAST Involved in the regulation of the iron regulon in response to decreased mitochondrial iron-sulfur cluster synthesis. May be involved in mitochondrial organization and biogenesis.^[1] ^[2]

Publication Abstract from PubMed

The yeast Saccharomyces cerevisiae monothiol glutaredoxin Grx3 plays a key role in cellular defense against oxidative stress and more importantly, cooperates with BolA-like iron repressor of activation protein Fra2 to regulate the localization of the iron-sensing transcription factor Aft2. The interplay among Grx3, Fra2 and Aft2 responsible for the regulation of iron homeostasis has not been clearly described. Here we solved the crystal structures of the Trx domain (Grx3(Trx)) and Grx domain (Grx3(Grx)) of Grx3 in addition to the solution structure of Fra2. Structural analyses and activity assays indicated that the Trx domain also contributes to the glutathione S-transferase activity of Grx3, via an inter-domain disulfide bond between Cys37 and Cys176. NMR titration and pull-down assays combined with surface plasmon resonance experiments revealed that Fra2 could form a noncovalent heterodimer with Grx3 via an interface between the helix-turn-helix motif of Fra2 and the C-terminal segment of Grx3(Grx), different from the previously identified covalent heterodimer mediated by Fe-S cluster. Comparative affinity assays indicated that the interaction between Fra2 and Aft2 is much stronger than that between Grx3 and Aft2, or Aft2 toward its target DNA. These structural and biochemical analyses enabled us to propose a model how Grx3 executes multiple functions to coordinate the regulation of Aft2-controlled iron metabolism.

Structural and Biochemical Insights into the Multiple Functions of Yeast Grx3.,Chi CB, Tang Y, Zhang J, Dai YN, Abdalla M, Chen Y, Zhou CZ J Mol Biol. 2018 Mar 7. pii: S0022-2836(18)30110-4. doi:, 10.1016/j.jmb.2018.02.024. PMID:29524511^[3]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Kumanovics A, Chen OS, Li L, Bagley D, Adkins EM, Lin H, Dingra NN, Outten CE, Keller G, Winge D, Ward DM, Kaplan J. Identification of FRA1 and FRA2 as genes involved in regulating the yeast iron regulon in response to decreased mitochondrial iron-sulfur cluster synthesis. J Biol Chem. 2008 Apr 18;283(16):10276-86. doi: 10.1074/jbc.M801160200. Epub 2008, Feb 15. PMID:18281282 doi:http://dx.doi.org/10.1074/jbc.M801160200
↑ Hess DC, Myers CL, Huttenhower C, Hibbs MA, Hayes AP, Paw J, Clore JJ, Mendoza RM, Luis BS, Nislow C, Giaever G, Costanzo M, Troyanskaya OG, Caudy AA. Computationally driven, quantitative experiments discover genes required for mitochondrial biogenesis. PLoS Genet. 2009 Mar;5(3):e1000407. doi: 10.1371/journal.pgen.1000407. Epub 2009 , Mar 20. PMID:19300474 doi:http://dx.doi.org/10.1371/journal.pgen.1000407
↑ Chi CB, Tang Y, Zhang J, Dai YN, Abdalla M, Chen Y, Zhou CZ. Structural and Biochemical Insights into the Multiple Functions of Yeast Grx3. J Mol Biol. 2018 Mar 7. pii: S0022-2836(18)30110-4. doi:, 10.1016/j.jmb.2018.02.024. PMID:29524511 doi:http://dx.doi.org/10.1016/j.jmb.2018.02.024

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5y4b"

@@ Line 1: / Line 1: @@
 ==Solution structure of yeast Fra2==
-<StructureSection load='5y4b' size='340' side='right' caption='[[5y4b]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
+<StructureSection load='5y4b' size='340' side='right'caption='[[5y4b]]' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[5y4b]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Baker's_yeast Baker's yeast]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Y4B OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5Y4B FirstGlance]. <br>
+<table><tr><td colspan='2'>[[5y4b]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae_S288C Saccharomyces cerevisiae S288C]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Y4B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5Y4B FirstGlance]. <br>
-</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BOL2, AIM15, FRA2, YGL220W ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=559292 Baker's yeast])</td></tr>
+</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5y4b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5y4b OCA], [https://pdbe.org/5y4b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5y4b RCSB], [https://www.ebi.ac.uk/pdbsum/5y4b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5y4b ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5y4b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5y4b OCA], [http://pdbe.org/5y4b PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5y4b RCSB], [http://www.ebi.ac.uk/pdbsum/5y4b PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5y4b ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/BOL2_YEAST BOL2_YEAST]] Involved in the regulation of the iron regulon in response to decreased mitochondrial iron-sulfur cluster synthesis. May be involved in mitochondrial organization and biogenesis.<ref>PMID:18281282</ref> <ref>PMID:19300474</ref>
+[https://www.uniprot.org/uniprot/BOL2_YEAST BOL2_YEAST] Involved in the regulation of the iron regulon in response to decreased mitochondrial iron-sulfur cluster synthesis. May be involved in mitochondrial organization and biogenesis.<ref>PMID:18281282</ref> <ref>PMID:19300474</ref>
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 22: / Line 21: @@
 __TOC__
 </StructureSection>
-[[Category: Baker's yeast]]
+[[Category: Large Structures]]
-[[Category: Abdalla, M]]
+[[Category: Saccharomyces cerevisiae S288C]]
-[[Category: Chen, Y X]]
+[[Category: Abdalla M]]
-[[Category: Chi, C B]]
+[[Category: Chen YX]]
-[[Category: Dai, Y N]]
+[[Category: Chi CB]]
-[[Category: Tang, Y J]]
+[[Category: Dai YN]]
-[[Category: Zhang, J H]]
+[[Category: Tang YJ]]
-[[Category: Zhou, C Z]]
+[[Category: Zhang JH]]
-[[Category: Electron flow]]
+[[Category: Zhou CZ]]
-[[Category: Electron transport]]
-[[Category: Fe metabolism]]
-[[Category: Fe-s cluster]]
-[[Category: Oxidative stress]]

5y4b

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Current revision

Solution structure of yeast Fra2

Structural highlights

Function

Publication Abstract from PubMed

References

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