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| ==The solution NMR structure of [C18S,C24S]brevinin-1BYa in sodium dodecyl sulphate micelles== | | ==The solution NMR structure of [C18S,C24S]brevinin-1BYa in sodium dodecyl sulphate micelles== |
- | <StructureSection load='6g4x' size='340' side='right'caption='[[6g4x]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''> | + | <StructureSection load='6g4x' size='340' side='right'caption='[[6g4x]]' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[6g4x]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6G4X OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6G4X FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6g4x]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rana_boylii Rana boylii]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6G4X OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6G4X FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6g4x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6g4x OCA], [http://pdbe.org/6g4x PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6g4x RCSB], [http://www.ebi.ac.uk/pdbsum/6g4x PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6g4x ProSAT]</span></td></tr> | + | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6g4x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6g4x OCA], [https://pdbe.org/6g4x PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6g4x RCSB], [https://www.ebi.ac.uk/pdbsum/6g4x PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6g4x ProSAT]</span></td></tr> |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/BR1A_RANBO BR1A_RANBO] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| </StructureSection> | | </StructureSection> |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Conlon, J M]] | + | [[Category: Rana boylii]] |
- | [[Category: Flynn, D P.O]] | + | [[Category: Conlon JM]] |
- | [[Category: Hewage, C M]] | + | [[Category: Hewage CM]] |
- | [[Category: Timmons, P B]] | + | [[Category: O'Flynn DP]] |
- | [[Category: Antimicrobial peptide]] | + | [[Category: Timmons PB]] |
- | [[Category: Antimicrobial protein]]
| + | |
- | [[Category: Cationic]]
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| Structural highlights
Function
BR1A_RANBO
Publication Abstract from PubMed
Brevinin-1BYa is a 24-amino acid residue host-defense peptide, first isolated from skin secretions of the foothill yellow-legged frog Rana boylii. The peptide is of interest, as it shows broad-spectrum antimicrobial activity, and is particularly effective against opportunistic yeast pathogens. Its potential for clinical use, however, is hindered by its latent haemolytic activity. The structures of two analogues, the less haemolytic [C18S,C24S]brevinin-1BYa and the more potent cis-dicarba-brevinin-1BYa, were investigated in various solution and membrane-mimicking environments by [Formula: see text] spectroscopy and molecular modelling techniques. Neither peptide possesses a secondary structure in aqueous solution. In both the membrane-mimicking sodium dodecyl sulphate micelles and 33% 2,2,2-trifluoroethanol ([Formula: see text] solvent mixture, the peptides' structures are characterised by two [Formula: see text]-helices connected by a flexible hinge located at the [Formula: see text] residues. With the aid of molecular dynamics simulations and paramagnetic probes, it was determined that the peptides' helical segments lie parallel to the micellar surface, with their hydrophobic residues facing towards the micelle core and the hydrophilic residues pointing outwards, suggesting that both peptides exert their biological activity by a non-pore-forming mechanism. Unlike that of the dicarba analogue, the C-terminus of the acyclic peptide is only weakly associated with the micellar surface and is in direct contact with the surrounding aqueous solvent.
Insights into conformation and membrane interactions of the acyclic and dicarba-bridged brevinin-1BYa antimicrobial peptides.,Timmons PB, O'Flynn D, Conlon JM, Hewage CM Eur Biophys J. 2019 Dec;48(8):701-710. doi: 10.1007/s00249-019-01395-y. Epub 2019, Sep 12. PMID:31515575[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Timmons PB, O'Flynn D, Conlon JM, Hewage CM. Insights into conformation and membrane interactions of the acyclic and dicarba-bridged brevinin-1BYa antimicrobial peptides. Eur Biophys J. 2019 Dec;48(8):701-710. doi: 10.1007/s00249-019-01395-y. Epub 2019, Sep 12. PMID:31515575 doi:http://dx.doi.org/10.1007/s00249-019-01395-y
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