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6obi

From Proteopedia

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Remarkable rigidity of the single alpha-helical domain of myosin-VI revealed by NMR spectroscopy

Structural highlights

6obi is a 1 chain structure with sequence from Meriones unguiculatus. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance.
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

A0A5H1ZR50_MERUN

Publication Abstract from PubMed

Although the alpha-helix has long been recognized as an all-important element of secondary structure, it generally requires stabilization by tertiary interactions with other parts of a protein's structure. Highly charged single alpha-helical (SAH) domains, consisting of a high percentage (>75%) Arg, Lys, and Glu residues, are exceptions to this rule but have been difficult to characterize structurally. Our study focuses on the 68-residue medial tail domain of myosin-VI which is found to contain a highly ordered alpha-helical structure extending from Glu-6 to Lys-63. High hydrogen exchange protection factors (15-150), small (ca 4 Hz) 3JHNHalpha couplings, and a near-perfect fit to an ideal model alpha-helix for its residual dipolar couplings (RDCs), measured in a filamentous phage medium, support the high regularity of this helix. Remarkably, the hydrogen exchange rates are far more homogeneous than the protection factors derived from them, suggesting that for these transiently broken helices the intrinsic exchange rates derived from the amino acid sequence are not appropriate reference values. 15N relaxation data indicate a very high degree of rotational diffusion anisotropy (D// / D upper left and right quadrants approximately 7.6), consistent with the hydrodynamic behavior predicted for such a long, nearly straight alpha-helix. Alignment of the helix by a paramagnetic lanthanide ion attached to its N-terminal region shows a decrease in alignment as the distance from the tagging site increases. This decrease yields a precise measure for the persistence length of 224+/-10 A at 20 degrees C, supporting the idea that the role of the SAH helix is to act as an extension of the myosin VI lever arm.

Remarkable rigidity of the single alpha-helical domain of myosin-VI revealed by NMR spectroscopy.,Barnes CA, Shen Y, Ying J, Takagi Y, Torchia DA, Sellers JR, Bax A J Am Chem Soc. 2019 May 22. doi: 10.1021/jacs.9b03116. PMID:31117653^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Barnes CA, Shen Y, Ying J, Takagi Y, Torchia DA, Sellers JR, Bax A. Remarkable rigidity of the single alpha-helical domain of myosin-VI revealed by NMR spectroscopy. J Am Chem Soc. 2019 May 22. doi: 10.1021/jacs.9b03116. PMID:31117653 doi:http://dx.doi.org/10.1021/jacs.9b03116

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 See Also
5 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/6obi"

@@ Line 1: / Line 1: @@
 ==Remarkable rigidity of the single alpha-helical domain of myosin-VI revealed by NMR spectroscopy==
-<StructureSection load='6obi' size='340' side='right'caption='[[6obi]], [[NMR_Ensembles_of_Models | 10 NMR models]]' scene=''>
+<StructureSection load='6obi' size='340' side='right'caption='[[6obi]]' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[6obi]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Merun Merun]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6OBI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6OBI FirstGlance]. <br>
+<table><tr><td colspan='2'>[[6obi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Meriones_unguiculatus Meriones unguiculatus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6OBI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6OBI FirstGlance]. <br>
-</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6obi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6obi OCA], [http://pdbe.org/6obi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6obi RCSB], [http://www.ebi.ac.uk/pdbsum/6obi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6obi ProSAT]</span></td></tr>
+</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6obi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6obi OCA], [https://pdbe.org/6obi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6obi RCSB], [https://www.ebi.ac.uk/pdbsum/6obi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6obi ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/A0A5H1ZR50_MERUN A0A5H1ZR50_MERUN]
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 15: / Line 17: @@
 </div>
 <div class="pdbe-citations 6obi" style="background-color:#fffaf0;"></div>
+==See Also==
+*[[Myosin 3D Structures|Myosin 3D Structures]]
 == References ==
 <references/>
@@ Line 20: / Line 25: @@
 </StructureSection>
 [[Category: Large Structures]]
-[[Category: Merun]]
+[[Category: Meriones unguiculatus]]
-[[Category: Barnes, A]]
+[[Category: Barnes A]]
-[[Category: Bax, A]]
+[[Category: Bax A]]
-[[Category: Sellers, J]]
+[[Category: Sellers J]]
-[[Category: Shen, Y]]
+[[Category: Shen Y]]
-[[Category: Takagi, Y]]
+[[Category: Takagi Y]]
-[[Category: Torchia, D A]]
+[[Category: Torchia DA]]
-[[Category: Ying, J]]
+[[Category: Ying J]]
-[[Category: Alpha-helical domain]]
-[[Category: Motor protein]]
-[[Category: Myosin-vi]]

6obi

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Current revision

Remarkable rigidity of the single alpha-helical domain of myosin-VI revealed by NMR spectroscopy

Structural highlights

Function

Publication Abstract from PubMed

See Also

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

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